YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC1683.12
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.97
Transmembrane Helix	40	60	0.64
Non-Cytoplasmic	61	77	0.66
Transmembrane Helix	78	95	0.63
Cytoplasmic	96	109	0.69
Transmembrane Helix	110	129	0.94
Non-Cytoplasmic	130	136	0.66
Transmembrane Helix	137	159	0.88
Cytoplasmic	160	169	0.92
Transmembrane Helix	170	191	0.94
Non-Cytoplasmic	192	202	0.88
Transmembrane Helix	203	224	0.92
Cytoplasmic	225	273	0.96
Transmembrane Helix	274	297	0.82
Non-Cytoplasmic	298	306	0.87
Transmembrane Helix	307	329	0.90
Cytoplasmic	330	337	0.84
Transmembrane Helix	338	358	0.95
Non-Cytoplasmic	359	364	0.84
Transmembrane Helix	365	386	0.92
Cytoplasmic	387	396	0.87
Transmembrane Helix	397	418	0.84
Non-Cytoplasmic	419	425	0.80
Transmembrane Helix	426	448	0.91
Cytoplasmic	449	482	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTMEEEKVI SKSTSVDISE GTFDDITIEK KEEAKLVRKL DWYLMPMFSV LYFLSFLDRA  60
   61 NIGNAAVVGL KEDLKLQAYQ YSAAVSVFYA TYITAETPSV LLVKKFGPHY YLSAMIIGWS 120
  121 LVTIFTCFVR HYWSLVLTRL LLGICEGGFF PCLSLYISMT YKREEQGKRL AYLYVCSCFS 180
  181 GAFGGLIATG LTKIPKSSGL PNWGWLYIIE GLISAISALW ILFCLPDDPS TARFLNPREK 240
  241 ELMKIRAEQR QKYMGSPNFD WTQFRKAFKD PKMYMSCVIQ FCQDLVLYGI STFLPSILKL 300
  301 ELGYSSLAAQ YMSVPVYALG GISVYVICLL SDRTNIRGWF IIGMNFFGLA GFIILLATTN 360
  361 SAANYVATYL IALPLYPTVA LNITWINNNM APHYRRATAL GCNQTIGNLA GVIAGQVYRS 420
  421 SPYKLGHGFA LGCTVVGTLT ATAMRFYLQR QNKIKQEILN GERVDEKKER DGCDALDFVY 480
  481 VL