YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	erg1
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATQDADIII IGAGITGCAL GAALGRQGRK VLVLERDMSE PDRIVGELLQ PGGIEALEKI  60
   61 GIADAVEGID GQWTSGYQIF YGDSNVSVPY PSKPNGGAYQ GIGFHYGRFV MNLRKALTST 120
  121 PNVTVTEATV NELLRDETGE VITGVVTSSK KSESPVEYKA PLTIVCDGCF SKFRKAFIDH 180
  181 PIQVTDHFLG LILTNPDYIA PGRGHVILSK VAPMVLYPIS STEARILINY PGKNLPPMET 240
  241 LKKYVLESCV PNMPEKLRPS LKAAVYNDRL RSMPNQFLPP TVNRTKGMIL VGDSNNMRHP 300
  301 LTGGGMTVCF HDAYLLSRFI SPSAVPDLLD YERILNQMNK FHWKRKGYSF VINVLSIALY 360
  361 KLFTPKNRYM KALESGCIDY FKRGGNCVEG PIRLLGGLDH SPSHLIGHFY AVCLYGIYQY 420
  421 VLSGPALLMP VRIIESLLIF LQASLVIIPY ILSEMSS

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.68
Transmembrane Helix	8	26	0.70
Cytoplasmic	27	346	0.70
Transmembrane Helix	347	364	0.56
Non-Cytoplasmic	365	403	0.75
Transmembrane Helix	404	422	0.83
Cytoplasmic	423	432	0.56
Transmembrane Helix	433	452	0.90
Non-Cytoplasmic	453	457	0.65