YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC63.10c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.86
Transmembrane Helix	53	73	0.84
Non-Cytoplasmic	74	79	0.68
Transmembrane Helix	80	101	0.87
Cytoplasmic	102	115	0.84
Transmembrane Helix	116	139	0.88
Non-Cytoplasmic	140	146	0.78
Transmembrane Helix	147	169	0.91
Cytoplasmic	170	176	0.85
Transmembrane Helix	177	198	0.88
Non-Cytoplasmic	199	229	0.83
Transmembrane Helix	230	248	0.95
Cytoplasmic	249	270	0.88
Transmembrane Helix	271	291	0.85
Non-Cytoplasmic	292	294	0.61
Transmembrane Helix	295	313	0.90
Cytoplasmic	314	336	0.88
Transmembrane Helix	337	355	0.95
Non-Cytoplasmic	356	362	0.80
Transmembrane Helix	363	384	0.90
Cytoplasmic	385	401	0.84
Transmembrane Helix	402	422	0.87
Non-Cytoplasmic	423	465	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKCYDTSE KIDREQECVE VNYQHRNFES ILEIFSVLFI PFLCNSGKKF LQISNASFFL  60
   61 PACFYLLGSS SIIQLYEPLL WLSSFPFCIL YVGFGENSVL YHEMYTMEMA LYCFRWTGFT 120
  121 FIEGILICTG LTGLCFATFS YEVSPVVSVL SGVLLISLPT LILLNLCILK LAAKLHLSAL 180
  181 FTTCLIYFFS ALLVFLVSRS WVAGQLGQAP EVWLFNQIFS HRNSLTRIKI IIWWIICLGC 240
  241 FIFILLRSNR NNPLGKYFTT EDEVLNFRRK TYHALVVFLF LPVCCLDPHF LHLSFSGVLF 300
  301 IFLFVEGIRI LRLKPFGKMI HEFLWEYTDN RDHKGPLIIS HIYLLIGCAI PIWLSNALKG 360
  361 PVASVELLVG VLCLGCGDSM ASIIGKRFGK HRISKTNKSI EGVFAFSISV FLVLHLTQAF 420
  421 HVCPSVTFWK TLFMSLCTAI LEGVSTENDN LILPMYMWVL YQALD