YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC1952.01
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.83
Transmembrane Helix	9	24	0.91
Non-Cytoplasmic	25	85	0.76
Transmembrane Helix	86	108	0.69
Cytoplasmic	109	125	0.65
Transmembrane Helix	126	151	0.73
Non-Cytoplasmic	152	166	0.57
Transmembrane Helix	167	189	0.87
Cytoplasmic	190	206	0.71
Transmembrane Helix	207	226	0.93
Non-Cytoplasmic	227	238	0.64
Transmembrane Helix	239	256	0.48
Cytoplasmic	257	264	0.56
Transmembrane Helix	265	289	0.84
Non-Cytoplasmic	290	302	0.53
Transmembrane Helix	303	323	0.71
Cytoplasmic	324	333	0.79
Transmembrane Helix	334	355	0.91
Non-Cytoplasmic	356	361	0.82
Transmembrane Helix	362	383	0.79
Cytoplasmic	384	408	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPNEKLKLL GLLSISFFLQ WYLANTWIAE FLYRRIEVST PVSGFLRVRE GLYLYENGLD  60
   61 PYSGGVFYQS PLLLILNYCC ELLGGISVTR FVYTSISTMG GLFVYLIAKQ ARVLDPNQVL 120
  121 STCSPLWISV IYLLNPLTFL PGIACSADMI LNFTTLMTIY FASCGSYAIY ACCMALTVFI 180
  181 NPNALLLFFP SYLILRKCNS SIKFRQIFVV FLFYLAGLII TSGFFLNSLS FLKIPFRVYL 240
  241 DSHDLTPNLG LWWYFFTEMF NEFRTFFLFV FAILPLMFVL PVSIRLYYLP LPITIALIGL 300
  301 HSLFKAYPSI CDLSIFLSLL PIFNKVQDRM RYSLLTNNAI VFALVLGSAF YHSWITLGCG 360
  361 NANFYYASNL ILALGLSLKI MDFLKALLLV DWYANHPQHE NIPLKQVQ