YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC19B12.02c
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.87
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSILSLAV AGLVGLAKAS VSPVHVDGRY FFYENGTRFF LKGIAYQPNV DDSDTEGTLF  60
   61 VDPLSDGDAC SRDVPYFQEL SVNAIRVYAV NASLDHSACM QAFQDAGIYV LSDLAQPYEA 120
  121 ISSSDPTWTV DLFSRYTEVV DSLAPYDNML GFIAGNEVIQ NNTNTNAAAF VKAAVRDVKS 180
  181 YIKSSGYRQI PVGYSTNDEE VTRDPMAYYF DCGDDDDHVD FYGINIYEWC GDSDFVSSGY 240
  241 QERTEEFSNM TVPMIFSEFG CIEVRPRTFS EIVALFSDNM TDVWSGGIAY QYFESENEYG 300
  301 VVTVSGDSVS TLTDFPYLSS RYASVIPSAS YESTMSATLT ATMSCQATNS AWMAATSLPP 360
  361 TPSEAVCECM DSTRSCVIND DVSSDDYSDL FSYVCNEISC DGITANGTYP GQYGSYSYCD 420
  421 AKQQLDYVLD AYYSAKGDCD FSGSATLVSA SSATGTCASY LSAAGSSATN AISLTADSNA 480
  481 VSRNSSASTM STSYTSGSGS SNSSGSSSNS SSKSSSGASS YNLNMVITFL SVVIGGTAVL 540
  541 FI

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	519	0.99
Transmembrane Helix	520	541	0.81
Cytoplasmic	542	542	0.83