YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAPB1A10.07c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.69
Transmembrane Helix	9	31	0.88
Cytoplasmic	32	42	0.59
Transmembrane Helix	43	63	0.87
Non-Cytoplasmic	64	96	0.75
Transmembrane Helix	97	117	0.85
Cytoplasmic	118	128	0.77
Transmembrane Helix	129	149	0.89
Non-Cytoplasmic	150	157	0.59
Transmembrane Helix	158	179	0.90
Cytoplasmic	180	199	0.78
Transmembrane Helix	200	224	0.89
Non-Cytoplasmic	225	233	0.69
Transmembrane Helix	234	255	0.87
Cytoplasmic	256	262	0.76
Transmembrane Helix	263	283	0.78
Non-Cytoplasmic	284	303	0.69
Transmembrane Helix	304	322	0.82
Cytoplasmic	323	365	0.79
Transmembrane Helix	366	385	0.92
Non-Cytoplasmic	386	414	0.73
Transmembrane Helix	415	435	0.87
Cytoplasmic	436	441	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAVLSIPLA LASSLSGVVG IASSFLVTSV LSLTNSIQSN VGAVISYAVL YFVNSLLSWC  60
   61 MLSSWFNSKL SKLSAGYLQF DCQNDGKCYS VIAVHRLSFT LVMFHLFLAF ILSLCNTRSR 120
  121 VAIKIQNGLW PFKIVLWFVL GIFSFFIPTK FLSFWGNIIS VMGSALFIVY GLMLLVDFAH 180
  181 TWAERCVDRV LTSDSSSSKF YLIGSTVGMY VVGLVLTILT YVFFCASSCS FNQAINTINL 240
  241 LLCIAVSCLS VHPTIQEYNP RSGLAQSSMV MCYTCYLILS ALANRPDEGQ CNPWGNSASG 300
  301 TREFSKVIGA AFTFFTILYS AVRAASSRES DDSYSYLYAD SHDMGVSTPL EDGSSEEDKH 360
  361 QSDYNFIWFH IVFVLAAFYT ASLLTNWNTT SVYENQKNDV FVRIGFSYAA VWVKIITSWV 420
  421 CHGLYVWSCL APVFFPYRFM I