YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC869.11
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	81	0.99
Transmembrane Helix	82	104	0.86
Non-Cytoplasmic	105	111	0.80
Transmembrane Helix	112	139	0.74
Cytoplasmic	140	152	0.63
Transmembrane Helix	153	170	0.67
Non-Cytoplasmic	171	189	0.61
Transmembrane Helix	190	208	0.97
Cytoplasmic	209	219	0.72
Transmembrane Helix	220	241	0.90
Non-Cytoplasmic	242	265	0.84
Transmembrane Helix	266	287	0.85
Cytoplasmic	288	303	0.91
Transmembrane Helix	304	324	0.95
Non-Cytoplasmic	325	356	0.92
Transmembrane Helix	357	377	0.89
Cytoplasmic	378	398	0.90
Transmembrane Helix	399	418	0.95
Non-Cytoplasmic	419	435	0.92
Transmembrane Helix	436	458	0.91
Cytoplasmic	459	477	0.84
Transmembrane Helix	478	500	0.90
Non-Cytoplasmic	501	513	0.92
Transmembrane Helix	514	534	0.91
Cytoplasmic	535	580	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPEYVSFSD KDTKSILNES KSSLKDVKPS LEEKSYITPG LVDDVEPKGK NFVVRFFDDF  60
   61 KPAKATGEDG TALKRSLKSR HMQMISIGGA IGTGLYVGSG SSLADGGPAS VIINYSLIGI 120
  121 MMFFIVYALG EMAVAYPVAG GFNTYATRFI DPAWGFAVSW NYFINYFVTF PLELTTCAIT 180
  181 FRYWTDINSA AWISIFLVVI IIVNLFGVRA YGEVEFILST VKVVATFGFI ILAIIINCGG 240
  241 VPTDHRGYIG GSIIKHKPFR HGFKGFCSVF TTAAFSFSGT EVIGLAAAEV DNPQKALPHA 300
  301 VKQVFWRIAI FYVVSLILIG LLISPDDPNL MGNGSTSVSP FVLAIKEANI KGLPSVFNAV 360
  361 IIISVVSVTN SSTYTAGRTL HGMANLKQAP SFFKYTDRLG RPLLAMIVVL LFGFFAYINE 420
  421 ADKNGNDVSD TVFNWLLALS GLSNFFTWGS ICLCHIIFRL AFKKQGHSLK ELGFVSPMGI 480
  481 WGSCIGLFFN ILCLMAQFYV SLFPIGGKPN ANDFFQGYLA APVTLAFFIG YKIYDRSHIP 540
  541 SLDKLDITTG LKTYENLDEE EDEPTTASKR IFKKISSVFC