YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC359.03c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	83	0.96
Transmembrane Helix	84	104	0.91
Non-Cytoplasmic	105	110	0.82
Transmembrane Helix	111	135	0.81
Cytoplasmic	136	149	0.67
Transmembrane Helix	150	182	0.58
Non-Cytoplasmic	183	188	0.76
Transmembrane Helix	189	208	0.94
Cytoplasmic	209	217	0.72
Transmembrane Helix	218	241	0.88
Non-Cytoplasmic	242	267	0.86
Transmembrane Helix	268	288	0.85
Cytoplasmic	289	303	0.87
Transmembrane Helix	304	324	0.95
Non-Cytoplasmic	325	355	0.91
Transmembrane Helix	356	377	0.88
Cytoplasmic	378	398	0.91
Transmembrane Helix	399	418	0.95
Non-Cytoplasmic	419	435	0.91
Transmembrane Helix	436	458	0.90
Cytoplasmic	459	477	0.83
Transmembrane Helix	478	499	0.89
Non-Cytoplasmic	500	513	0.90
Transmembrane Helix	514	534	0.93
Cytoplasmic	535	579	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKDYDFDI ESVLPEEKAP QVSEAKKDYI SQESTVLSGQ VDFVEPEHKG FFQNLIDGFK  60
   61 PAREADGNGG PALKRGLSTR HMQLMSIGGA IGSGLYVGSG SALADGGPAS VIINYILIGI 120
  121 MMFFVIYALG EMAVAYPVAG SFNTYATRFI DPAWGFAVSW NYFFNYFVTF PFELTTCAIT 180
  181 FTFWTDVNCA VWISIFLVVV IGINLFGVRV FGEVEFVLAL IKVVATVGFI ILAIIINCGG 240
  241 VPTDHRGYIG GSIIKQKPFR HGFKGFCSVY TTAAFSFSGT EIVGLAAAEV GDPRKTLPGA 300
  301 VKQVFWRVAI FYIVSLILIG LLISPDDPKL MGNGSASVSP FVLAIQEANI KGLPSVFNAV 360
  361 IIISVISVTN SSTYTAGRTL HGMANLKQAP AFFKYTDRLG RPLIAMIVVL SFGFFAYINE 420
  421 ANNNGNDISD TVFDWLLAIS GLSNFFTWGS ICLSHIMFRL AFKKQGHSLK ELGFVSPMGI 480
  481 WGSVIGLGFN ILCLMAEFYV SLFPIGGSPN ANDFFQGYLA ACITLVFFIG YKIYDRSHIP 540
  541 SLDKLDITTG LKTYEYEETK DSSDTGRFRF FKKIINTVC