YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC17G6.07c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKDLISRLE RQFKLKRDEF QDPLELLKFE KNLDYARKLL WEEGKCQLDK VAEPQGLSKR  60
   61 IMDLQGRIYD LNVTMEKKLK IEEKKIKSKQ EKEIAHALQS IQERELRERQ QMSNVEASNA 120
  121 QLLTNQRSMQ TEISESLLHL ASVLKENALS FTNALVTDNQ VVERTGSLLD KNAHSLRHAN 180
  181 HGVQSYSKSK RLSFWLQLGM IIAVVVSFIV MIFILQFTKN QN

Type	Start	End	Confidence
Cytoplasmic	1	193	0.79
Transmembrane Helix	194	215	0.95
Non-Cytoplasmic	216	222	0.67