YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC23C11.06c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTSQDVNAE AANERSALLP RFLGSHRGNV PENTDTYALT PLFYWIRSTS VGLLLITIIC  60
   61 HLFLLLNIFI SIPIISHLSP GFMPVGFTAL AAILLAMQIM FVYSPNAPER VTQRIICFLL 120
  121 AIDVLVVFLS PILRHREGWR SNAFVLWAFL MSLWIVITDL MLFRQYKEEH PDYDAIAHRG 180
  181 YYWSWSPSTW PWRQVGSLTA STILSVILTI LTIHTLVTLI MRAYDGALSA PGQLYTVTDS 240
  241 KARVHLECFG SSSSNNKTTV LVEGGEVSVH PFKEWLLNLQ HTSPDLYEES KDFEGYENDV 300
  301 KPYLSPDTRV CVWDRPGMGW SDNIGSPSSV GIVMDLLTEA LAQADVSGPY VLVAHGIGGV 360
  361 YSNVFAARHL SEVKGIVFVD AGSVQTLKDS GQFLSRFLLF VRGWLSPLGI NRIFGSIFMG 420
  421 KTRQDRVYGM YSWTSDRWVK SKIEESLTGP SFSRYELQSA QSVLPKDLPV SVISAGKSMK 480
  481 RFKKWPDEQR QLSKLTQRTV WDIVNNAPHD VWLSDDGGDL IMKRLGEIIY GGWPN

Type	Start	End	Confidence
Cytoplasmic	1	50	0.53
Transmembrane Helix	51	75	0.83
Non-Cytoplasmic	76	80	0.46
Transmembrane Helix	81	103	0.88
Cytoplasmic	104	110	0.47
Transmembrane Helix	111	133	0.85
Non-Cytoplasmic	134	142	0.41
Transmembrane Helix	143	163	0.91
Cytoplasmic	164	194	0.47
Transmembrane Helix	195	218	0.83
Non-Cytoplasmic	219	535	0.50