YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YDW1_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	56	0.97
Transmembrane Helix	57	79	0.90
Non-Cytoplasmic	80	84	0.78
Transmembrane Helix	85	107	0.88
Cytoplasmic	108	115	0.76
Transmembrane Helix	116	135	0.93
Non-Cytoplasmic	136	155	0.86
Transmembrane Helix	156	178	0.85
Cytoplasmic	179	191	0.83
Transmembrane Helix	192	212	0.94
Non-Cytoplasmic	213	223	0.79
Transmembrane Helix	224	243	0.95
Cytoplasmic	244	253	0.74
Transmembrane Helix	254	271	0.62
Non-Cytoplasmic	272	311	0.57
Transmembrane Helix	312	342	0.65
Cytoplasmic	343	363	0.67
Transmembrane Helix	364	387	0.84
Non-Cytoplasmic	388	404	0.73
Transmembrane Helix	405	424	0.72
Cytoplasmic	425	441	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQEIRSNNY DISVSTVEDT SFEAMDDSIL EIIDDEAPEI QGKPKANIST HFRNMLAMFG  60
   61 NFLSLGFFLV IIVLVGIAFE IGGRFCGLIL TLALEVYFFS TALLKLFGLR KIALTLHFFE 120
  121 PLLVFILLII ALNASPSIEQ NKYASFLASA WNTALLHFTP LFNLLEGMAS LLVVQALGHL 180
  181 SRWLVHNKSE NWMFFILLNA SSAISMSLYL LYRVSSFSIS NPNALMIGFS LATVIVISIY 240
  241 GVASGRANLS EASLMFLYIA YTVYMVCTDF GNPNTSSLEK PKFDYLPPNI LQSVHYLIST 300
  301 ISATLPRTLY NIVLFMVAAA KTVAPSVFAT FAFRISVMYA VTRILPAIQN NIIFLEYSRT 360
  361 SKQGMWSILS PCILIAVYTN LLLQHLYPTP SFTSPVNQIL CSAEIWRWVS AILTLLLYAI 420
  421 ELAYSKESDT GQALASHFKL D