YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NNRE_SCHPO
Protein type:	Globular with Signal Peptide
Type Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSISCLSASA AKALDAELMS AGAFSIDQLM ELAGLSVSQA VYREYPPSQY SQVLICCGPG  60
   61 NNGGDGLVAA RHLWQYGYKP TVYYPKPSSP ELYKRLCKQL DDLDIPVVKS HDSNHFSQLL 120
  121 RDSKLVVDSI FGFSFKGPVR DPFGSILAAI VESKIKVLSV DAPSSWEIDE GPQKEGPLKD 180
  181 FDPDTLISLT APKPCSKFYK GKHYLGGRFV SKVITKKFNL SLPPYPGIDQ VVDITNKPLS 240
  241 MV

Type	Start	End	Confidence
Signal Peptide	1	16	0.70
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	242	0.99