YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	alg10
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.87
Transmembrane Helix	8	27	0.96
Non-Cytoplasmic	28	57	0.89
Transmembrane Helix	58	74	0.87
Cytoplasmic	75	80	0.65
Transmembrane Helix	81	102	0.81
Non-Cytoplasmic	103	122	0.86
Transmembrane Helix	123	148	0.81
Cytoplasmic	149	162	0.88
Transmembrane Helix	163	183	0.86
Non-Cytoplasmic	184	191	0.74
Transmembrane Helix	192	212	0.91
Cytoplasmic	213	221	0.78
Transmembrane Helix	222	242	0.93
Non-Cytoplasmic	243	260	0.84
Transmembrane Helix	261	280	0.91
Cytoplasmic	281	296	0.92
Transmembrane Helix	297	319	0.89
Non-Cytoplasmic	320	335	0.95
Transmembrane Helix	336	355	0.95
Cytoplasmic	356	364	0.87
Transmembrane Helix	365	386	0.92
Non-Cytoplasmic	387	411	0.87
Transmembrane Helix	412	433	0.92
Cytoplasmic	434	445	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLGKAIILI LWIFLAFTGL LAIQYYVPNP YLDEIFHIAQ AQRFCRKDWD WDPAITTPPG  60
   61 LYLVSVALSP FIGCSNVSLR LINWLVGVIG LPWLINDIVS LLNNRKGDVV TYFAYTLSSL 120
  121 PPLWFFSFLY YTDIGSTFFV LLAYDFALRK SAFSSSVSCF FSLWFRQTNI VWMVFIAVTY 180
  181 FASNMSFFNP HLAEATFADV LLTIISFLGV FLKNLRRFSC PILSYGAVFC SFLAFLLWNG 240
  241 SIVLGDKSHH QASIHLSQIN YFLWFFFFFS FPSYIIKYLM SHSRRSKLLS AVFSKKSFLI 300
  301 VSVLLLIAHF NTIFHPFILA DNRHYLFYVF NRLFRIWWLK YLGPFSYLIL YYFFLDISKL 360
  361 QMTSLTFFLL ISTTILTLVP APLVEFRYFL LPFLFWRFHL PLPSGRECLM EYALHMVINS 420
  421 VTLYIFLFRT FIWPSEPNAL QRFMW