YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC965.11c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	48	0.99
Transmembrane Helix	49	70	0.92
Non-Cytoplasmic	71	77	0.68
Transmembrane Helix	78	97	0.94
Cytoplasmic	98	113	0.80
Transmembrane Helix	114	137	0.82
Non-Cytoplasmic	138	155	0.83
Transmembrane Helix	156	177	0.87
Cytoplasmic	178	183	0.90
Transmembrane Helix	184	206	0.90
Non-Cytoplasmic	207	223	0.86
Transmembrane Helix	224	245	0.89
Cytoplasmic	246	265	0.91
Transmembrane Helix	266	286	0.92
Non-Cytoplasmic	287	317	0.95
Transmembrane Helix	318	340	0.88
Cytoplasmic	341	361	0.91
Transmembrane Helix	362	383	0.90
Non-Cytoplasmic	384	391	0.77
Transmembrane Helix	392	413	0.95
Cytoplasmic	414	434	0.92
Transmembrane Helix	435	456	0.91
Non-Cytoplasmic	457	466	0.69
Transmembrane Helix	467	484	0.94
Cytoplasmic	485	537	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAAPSEKVP AKKLSSSENL DIGVSEVVTV DAAENNSNGI KRGLKTRHVS MMALAGIIGP  60
   61 GVFIGMGSAL HIGGPVGLIV GFAIVSIVVF GVMLSIGEFN SLFDFNFNTH AARWVDPAFG 120
  121 AAIGWNYVIV WLTNIAAEYT SLTSILQYWG PHVPSYGFFL IFWGFFTCYQ MLGVSVFGES 180
  181 EYILAFIKLL FITGFYIFAI IYAAGGIPHH KPPNLFKEMP LAHGFGGIVS AFVYAGVFFS 240
  241 GVESVSMTAA ESKNPKKAIP LAVRQTFWRI LYVYFGISIS YGITVAWNDP NLSSGSKTLK 300
  301 SPMTIAIMNA GWNHAGDFVN AVILITCLSS INSGIYIGSR SLYNLAKDGM APKIFKRVDK 360
  361 RGVPWVAVHS VHLFGFLSIM NYSTGAVKAY GYIINLAGVS AFIVWTAIIF VHFRFRRGWV 420
  421 KQGYALSDLP FKSPLYPFPQ LIGFVIGIIL TLVQGWTVFK PFAAGDFVDA YILLPLFFVI 480
  481 WLSYKFIKKT KWVSYEDMDF INGRRVIEPT YSNEQSSDKE TEDGKKTSFW NRVWKEV