YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC74.04
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	59	0.97
Transmembrane Helix	60	83	0.86
Non-Cytoplasmic	84	94	0.80
Transmembrane Helix	95	114	0.94
Cytoplasmic	115	124	0.73
Transmembrane Helix	125	146	0.86
Non-Cytoplasmic	147	184	0.85
Transmembrane Helix	185	204	0.90
Cytoplasmic	205	214	0.76
Transmembrane Helix	215	235	0.91
Non-Cytoplasmic	236	256	0.89
Transmembrane Helix	257	277	0.88
Cytoplasmic	278	296	0.84
Transmembrane Helix	297	320	0.88
Non-Cytoplasmic	321	345	0.86
Transmembrane Helix	346	362	0.94
Cytoplasmic	363	401	0.89
Transmembrane Helix	402	423	0.92
Non-Cytoplasmic	424	428	0.69
Transmembrane Helix	429	449	0.94
Cytoplasmic	450	467	0.91
Transmembrane Helix	468	488	0.91
Non-Cytoplasmic	489	495	0.86
Transmembrane Helix	496	517	0.92
Cytoplasmic	518	557	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIPILDALT SSSGKKNSAE FSIHSTSNPT NPEEPNITSE ADNAEDLAAL GYKQEFQRGL  60
   61 SLFSVFSVSF SLLGLLPSVA TTLPYSIGYT GTPGLLWGWL IAMVFIICIA LSMAELCSAM 120
  121 PTSGGLYYAA AVLAPEGWGP LAAWFTGWSN YIAQLVGGPS INYSTAAMLL GAVNIGNPNY 180
  181 EVQNYQLFLV SIAIQFIHFI LASMPTKYIA KLNSVGTYLN TLFLFISMIV ILAMSSKNHG 240
  241 FNETSKVWSH IENYTDWPDG FAILMSFCGV IWTMSGYDAP FHMSEETANA SVNAPRGIIL 300
  301 TAAIGGIMGW VMQIVIAYTV VDQTAVVTGS DSMWATYLSQ CLPKRAALGI LSLTIVSSFL 360
  361 MGQSNLIASS RIAYSYARDG VLPYSEWVAT VNPITKTPIR AVFVNFVIGV LILFLAFAGA 420
  421 ITIGAVFSVT AIAAFTAFVA PVAMRVFFVK DADFRTGPFN LGKFSKPIGF CSVSFVALMI 480
  481 PILCFPSVKN PTPAEMNWTC LVFGAPMLAV LIWYAISGRK WFKGPRINLA SEGDNSTLEG 540
  541 VELYTGSEEL PQKKEKE