YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pdt1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	70	0.91
Transmembrane Helix	71	86	0.87
Non-Cytoplasmic	87	104	0.80
Transmembrane Helix	105	124	0.91
Cytoplasmic	125	144	0.84
Transmembrane Helix	145	164	0.91
Non-Cytoplasmic	165	175	0.71
Transmembrane Helix	176	199	0.90
Cytoplasmic	200	212	0.86
Transmembrane Helix	213	235	0.89
Non-Cytoplasmic	236	256	0.92
Transmembrane Helix	257	280	0.86
Cytoplasmic	281	320	0.94
Transmembrane Helix	321	344	0.86
Non-Cytoplasmic	345	372	0.90
Transmembrane Helix	373	396	0.84
Cytoplasmic	397	411	0.89
Transmembrane Helix	412	431	0.95
Non-Cytoplasmic	432	437	0.78
Transmembrane Helix	438	460	0.87
Cytoplasmic	461	494	0.89
Transmembrane Helix	495	517	0.87
Non-Cytoplasmic	518	521	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQSYYMND LDDLRSLESS TLNKKDTAIN ELNPEQNDTR RSTDLLLEDK YGIQTGFSKY  60
   61 WKKCTYGIRE YCKFIGPGFL IAVAYIDPGN YSTDLDAGSR FQYKLLFIVF LSNLFAVYLQ 120
  121 SLCIRLGSVT GMDLARNCRE HYNRYICWSF YVLAEIAIIA TDIAEVIGTA VALKILMHIP 180
  181 LVAGVVITIL DVLLVLIAWR PEGSMLSVRI FETAVALLVL VVAISFAVVL GRVHIGGAGT 240
  241 VFKGFLPSST VFSREGLYSS IGILGATVMP HSLFLGSGLV QTRLRDLDVR RGNYTPVGDC 300
  301 SDYRPTHETI KHSLTYSIVE VALSLFTFAL FTNSSILIVA GAVFYNTSGA DTSDLFSIYD 360
  361 LLKEYVSISC GRLFAVALLF SGMSAGYVCT IAGQIVSEGY INWNLRPWLR RVITRAIAII 420
  421 PCLVVSAAVG QSGLNQVLNA SQVCLSILLP FLTFPLVMFT CSRKVMRVVS DSTNEETGQL 480
  481 IRETHDYSLG WTMTIVTWAI WLFLTALNLL LIVWLGMGVS F