YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC30D11.11
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTVKTFSST ETEGFKKRLL SRRHSSYQVR DEEDDVLEEF IVLKLDLFLT RLNHRMKRLE  60
   61 ELGLPNRKDA AAATYQFLAN LQASFLGTTI LGKTQVSFIL RRIEETYNDV LSACDTFPAK 120
  121 AQKALTFLEH HLRDLEDYAE KSKNNVETLM TDIKDVVEHA AKLGAQRLIT LEELPVQWHN 180
  181 NPYIIRGYRF YTSKRKCFRS ILSWHNETFN IWTHLSAFIV FFAVLAYFYP SSSSWVSSNV 240
  241 SNRIVRIFFL LSAMKCLGCS VIWHTFSSLS NYKHMRCAAC MDYVGISALI AASIISVEYH 300
  301 AFVCQGPLRF IFIAFTGTLG LIGIYTPWKK WFNEYKYRSV KIFFFVGLAC SGLIPMITMF 360
  361 YIKGTRRTVK YLDPVFKSIF SYIIGVLFYG LHIPERFLPG KFDIIGNSHQ IWHIAIIVGV 420
  421 AFHYTGVKRF ETDYEAFSCG VL

Type	Start	End	Confidence
Cytoplasmic	1	208	0.78
Transmembrane Helix	209	229	0.93
Non-Cytoplasmic	230	243	0.73
Transmembrane Helix	244	266	0.90
Cytoplasmic	267	278	0.68
Transmembrane Helix	279	302	0.83
Non-Cytoplasmic	303	307	0.65
Transmembrane Helix	308	328	0.91
Cytoplasmic	329	339	0.69
Transmembrane Helix	340	362	0.91
Non-Cytoplasmic	363	373	0.68
Transmembrane Helix	374	393	0.85
Cytoplasmic	394	408	0.60
Transmembrane Helix	409	427	0.80
Non-Cytoplasmic	428	442	0.60