YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPAC24H6.13
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.87
Transmembrane Helix	12	33	0.92
Cytoplasmic	34	88	0.98
Transmembrane Helix	89	112	0.89
Non-Cytoplasmic	113	138	0.95
Transmembrane Helix	139	158	0.96
Cytoplasmic	159	379	0.96
Transmembrane Helix	380	402	0.88
Non-Cytoplasmic	403	421	0.79
Transmembrane Helix	422	446	0.86
Cytoplasmic	447	468	0.80
Transmembrane Helix	469	495	0.72
Non-Cytoplasmic	496	518	0.81
Transmembrane Helix	519	544	0.79
Cytoplasmic	545	563	0.77
Transmembrane Helix	564	588	0.78
Non-Cytoplasmic	589	589	0.53
Transmembrane Helix	590	612	0.84
Cytoplasmic	613	627	0.85
Transmembrane Helix	628	649	0.93
Non-Cytoplasmic	650	654	0.79
Transmembrane Helix	655	673	0.91
Cytoplasmic	674	871	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSSSSSTS AFVSSLVFNF AIFCAFIGLF LCLRPREKHV YQPRCIIDTQ PKEEKPEPSP  60
   61 SSPFGLFAYV VKRSETYLIQ YAGVDGYFFI RYLFTFGALC ILGCLVLFPI LLPVNATNGV 120
  121 GEKGFDILSF SNVKNHNRFY AHVFLSWLFF GFTIFIIYRE LRYYVIFRHA MQSSGLYNNL 180
  181 PSSSTMLLTE LPNSVLNDEE TLHELFPNAS EFTCVRDLKK LEKKVKKRSD LGNKYESTLN 240
  241 SLINKSVKKH NKLVKKHKPL PSTLDYTAYV KKRPTHRLKF LIGKKVDTID YCRDTIAELD 300
  301 EVVDKLQTSL EERKKVGSVF IRFRSQTDLQ TAYQAFLYSK KFRKYRFGRA LVGIAPEDIV 360
  361 WSNLDLSMYT RRGKKTISNT ILTLMIIFWA FPVAVVGCIS NVNYLIEKVH FLKFIDHMPP 420
  421 KLLGIITGIL PSVALSILMS LVPPFIKFLG KFGGALTVQE IENYCQNWYY AFQVVQVFLV 480
  481 TTMTSAATSA VVQVIKEPAS SMTLLASNLP KASNFYISYF LLQGLSIPGG ALLQIVTLLL 540
  541 SKVLGRIFDN TPRKKWNRWN QLSAPSWGTV YPVYSLLVTI MICYSIIAPI IIGFAAVAFV 600
  601 LIYFAYSYNL IYVLGHNADA KGRNYPRALF QVFVGLYLAE VCLIGLFVLA KNWGATVLEA 660
  661 VFLGFTVACH LYFKYKFLPL MDAVPISAIE SVSERPEIKY PMDLGTSEMK NVGRAYPEIL 720
  721 EKLSSSSGSD EFLETSSRTS ENTKEKIDKD DEGFAITNIS SVHKMPSFVL SYFSDLAASN 780
  781 RILTGFDRVL QLLPSFYDIP VRVRNVQYVS PALKATPPSV WIPKDPLGLS TYAIEDARGK 840
  841 VDIFDDNTTF NEKGNLQYTG PPPDYDEAIR S