YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sxa2
Protein type:	Globular with Signal Peptide
Type Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSLFLKSLF AIIIIELTII HALPTYTVHW KCSIQQANTS SASSNQTVQP RQHAAPSSDR  60
   61 IKSLPEFKGS LPELYSGYLE ANSDKSLFYT YAPAVVDSET FIVWLQGGPG CAGTLGFFSE 120
  121 NGPIEISQSS PSPSLNPESW TNFANMLWLD QPFGTGYSQG QAAYTTTIEE ASSDFVNALK 180
  181 SFYQKFPHLM KKKLYLVGES YGSIWSANFA EALLSEPSLN INFMGVGIVS GLTADYETQE 240
  241 QITASIWVEH ISKLGYYFNN TSSTISEEFK KRNKECQYDS VLNRLTFPTE QYPIWRPEYN 300
  301 FSTSTSLRKR EALDGEDIGN VFNSISGCDL YSLSNFLLYL ENSCVITYDV SLDCSFNEYN 360
  361 DPLITYLNRE DVRSSLHATK ASTALTSGEG VFADGCNFDL YKKIVSNNVE SVLVEIIPRL 420
  421 TEKYKVSFLA GALDLQILWT GTLLALQNTT WNGWQGFTQS PGSLETTNGF TLDERNLAFT 480
  481 LSNSVGHMAP SKDPQMVREW LENTLLY

Type	Start	End	Confidence
Signal Peptide	1	22	0.56
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	507	0.97