YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	stm1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVIAPSFDM ANILTELSSF LGALSLGCWV VLLIPQLLEN YKNQSGESIS DLFLIIWLIG  60
   61 DFFNVLGSIY GNVSSTVLVL SFYYIVSDST LLMQIYYYRW KAARRIASRE HEPLLQSRSL 120
  121 EEGLHAPIGK QQIWWDRLST RQQFGVMGCV VIVSTIVGNL IISSASSDKS DDDLNAWPFT 180
  181 AGCISSVLYF CARIPQIIKN HKAKSTEGLS IIFFVLASVG NTSYAFSILV FPASDYLNYT 240
  241 YANLPWILGA FSTIFLDIYI FYQFIKYRNH Y

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.77
Transmembrane Helix	17	38	0.86
Cytoplasmic	39	51	0.76
Transmembrane Helix	52	71	0.87
Non-Cytoplasmic	72	78	0.70
Transmembrane Helix	79	98	0.90
Cytoplasmic	99	143	0.96
Transmembrane Helix	144	165	0.93
Non-Cytoplasmic	166	173	0.92
Transmembrane Helix	174	194	0.90
Cytoplasmic	195	208	0.87
Transmembrane Helix	209	231	0.90
Non-Cytoplasmic	232	241	0.85
Transmembrane Helix	242	265	0.85
Cytoplasmic	266	271	0.97