YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ogm4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	57	0.98
Transmembrane Helix	58	77	0.83
Non-Cytoplasmic	78	145	0.78
Transmembrane Helix	146	165	0.75
Cytoplasmic	166	170	0.58
Transmembrane Helix	171	189	0.67
Non-Cytoplasmic	190	194	0.84
Transmembrane Helix	195	217	0.90
Cytoplasmic	218	226	0.87
Transmembrane Helix	227	244	0.93
Non-Cytoplasmic	245	249	0.65
Transmembrane Helix	250	268	0.93
Cytoplasmic	269	282	0.88
Transmembrane Helix	283	304	0.93
Non-Cytoplasmic	305	605	0.99
Transmembrane Helix	606	628	0.93
Cytoplasmic	629	643	0.94
Transmembrane Helix	644	665	0.85
Non-Cytoplasmic	666	673	0.70
Transmembrane Helix	674	693	0.93
Cytoplasmic	694	725	0.96
Transmembrane Helix	726	747	0.91
Non-Cytoplasmic	748	778	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKSEKAVK KAQKLSKEPS VELTDTKSSD NVTPKQKSPN STEEDVSLNL KTLKAKKFKL  60
   61 AFVLITVLSF ITRFWNLNLP GEVVFDEVHF GKFASYYLQG KYFFDLHPPF AKLLLALVAK 120
  121 LAGYDGHYLF DNIGDNYKDN GVPYVTIRAW PALLSSLVPP VVFLIMKESG YDLLACIVSS 180
  181 SLVLFDNAHV TEGRLILLDA TLLFSMVCAI YCYVRFFKLR HTPFSRPWWA WLFFTGFFLS 240
  241 CTISTKYVGF FTFLSIGLSV CLELWYLWDI KTGLTVERFF QHFLARFFCL IFFPFLFFLF 300
  301 WFYMHFNILT ISGPGDSFMS LEFQETLSDN PITANSTILN YYDIVTIKHM GTNAFLHSHP 360
  361 EKYPIPYDDG RISSGGQQVT GYQFDDENNY WMILPADHYD PPIEAKLNVP VKNMDYIKLH 420
  421 HVGTNTDLMT HDVASPYHPT NEEFTTVSVD ESAGKKHEYT LFQVVMSDNT DPQRPLYTKA 480
  481 SSFKLIHKLT HVAMWSDPKP LPDWAFKQLE INGAKNIQTG SIFWTFDDII GLKDSRLKKE 540
  541 KKIPKKLPFW KKYLELQLTM FRQNNMLTEF HPYSSNPSDW FTLHHGIAFW AKSEENKQIY 600
  601 LLGNPIGWWI IAGTVLSTTV VAAAEILLRQ RGIRTLPETV RNHFYRSTMF FYMTYVFHYL 660
  661 PFFIMGRQLF LHHYLPAHLA GSLLVGAFIQ LACRKSFRSP VSAGVPIPKD VDEKGHSKCH 720
  721 RKYGHVIELI CTLLLIFVVI YCFTFFAPMT YGDKSLSVDE WTRRKWLDSW VFQYQKQN