YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ogm1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.94
Transmembrane Helix	31	50	0.92
Non-Cytoplasmic	51	118	0.88
Transmembrane Helix	119	142	0.86
Cytoplasmic	143	148	0.72
Transmembrane Helix	149	167	0.73
Non-Cytoplasmic	168	169	0.51
Transmembrane Helix	170	191	0.76
Cytoplasmic	192	206	0.63
Transmembrane Helix	207	240	0.77
Non-Cytoplasmic	241	256	0.65
Transmembrane Helix	257	279	0.87
Cytoplasmic	280	538	0.78
Transmembrane Helix	539	559	0.58
Non-Cytoplasmic	560	572	0.74
Transmembrane Helix	573	594	0.91
Cytoplasmic	595	607	0.68
Transmembrane Helix	608	628	0.81
Non-Cytoplasmic	629	636	0.67
Transmembrane Helix	637	659	0.88
Cytoplasmic	660	667	0.63
Transmembrane Helix	668	687	0.91
Non-Cytoplasmic	688	893	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKQSTFQDP KEKHRIQRDV KLSRPRKRFS FLDYVVVIFL TVVAFCVRAQ RLMNPAKVVF  60
   61 EELRYYNYAV DYVNNKLLMD VYPPLGKLLF SLVAALTGNK YELNTLDEPG QQYPFTDVAY 120
  121 SMRLFTCLLG SLLVPLMYGT VYFPTKSKTA ASLAALFVIF DNGLITMSRY IMIEIPALYF 180
  181 MSLTAFYWSV YEAQQKRPFS LRWHTSLLST GVALGLALST KLSAMFTFGW LLILAAFHLW 240
  241 NLLGDLSVPM YRIVKHLFSY IFYLIGVPIT VYLAVFAVHS HIAYKASVAD AFLPPEHRHA 300
  301 LAGNRFDDQF ADVAYGSLVT IRNAIPEHGY LHSSELLYPE GTEQQIISLV DEPNQNALWI 360
  361 IEHEHSQDNN RSNIELLKDG SVVRLRHVMT GRALHSHEHK PIVSNNDWQL EASAYGGFGF 420
  421 EGDANDLFRI QILEKKSKHA TSNGTVETLN TKFRLIHVFA NCELMSSHRR FPDWGDYQRE 480
  481 VTCCRNCVER STTWFIESNY HDGLPSDSRK ITYRKPGFLE SFVEHNKLMW LKDRKMGDGH 540
  541 VYESSALTWP LLLGPLRFFY EQHLQVFFMG NPFVWYSVIS LVAFFVIVQI FCLARWNLGY 600
  601 NDFGPSAFHY NYNIGKFVVA WLLHWAPYIL ETDRVFLYHY LPALYFGIAA LGVSWSFLGN 660
  661 AVFGNRTAYK ALSVIIMALM FLVYRLYSPF TYMTTLTKSS CRALELKGSW NFHCNTYLDN 720
  721 LSDYKFSSDA GETYFEKAAP HPFVYSEDTA KKSEGDTPLN KNLNDYYPSW DQRVEAGYKL 780
  781 AAQQKAEQEA REAAEKAASE AAERSSSEAA ASSSSESVAA ASVEAERLAM EADEFNGASE 840
  841 TVDGASVEAE RSAMEAAALN NAAESTEVVG SSPESVASEQ EENVAESAQA RVE