YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pma1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	110	0.97
Transmembrane Helix	111	133	0.86
Non-Cytoplasmic	134	138	0.76
Transmembrane Helix	139	161	0.80
Cytoplasmic	162	286	0.80
Transmembrane Helix	287	311	0.85
Non-Cytoplasmic	312	322	0.32
Transmembrane Helix	323	351	0.74
Cytoplasmic	352	688	0.58
Transmembrane Helix	689	710	0.91
Non-Cytoplasmic	711	716	0.73
Transmembrane Helix	717	736	0.91
Cytoplasmic	737	752	0.67
Transmembrane Helix	753	771	0.95
Non-Cytoplasmic	772	824	0.79
Transmembrane Helix	825	845	0.95
Cytoplasmic	846	855	0.72
Transmembrane Helix	856	877	0.93
Non-Cytoplasmic	878	919	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADNAGEYHD AEKHAPEQQA PPPQQPAHAA APAQDDEPDD DIDALIEELF SEDVQEEQED  60
   61 NDDAPAAGEA KAVPEELLQT DMNTGLTMSE VEERRKKYGL NQMKEELENP FLKFIMFFVG 120
  121 PIQFVMEMAA ALAAGLRDWV DFGVICALLM LNAVVGFVQE YQAGSIVDEL KKSLALKAVV 180
  181 IREGQVHELE ANEVVPGDIL KLDEGTIICA DGRVVTPDVH LQVDQSAITG ESLAVDKHYG 240
  241 DPTFASSGVK RGEGLMVVTA TGDSTFVGRA ASLVNAAAGG TGHFTEVLNG IGTILLVLVL 300
  301 LTLFCIYTAA FYRSVRLARL LEYTLAITII GVPVGLPAVV TTTMAVGAAY LAEKQAIVQK 360
  361 LSAIESLAGV EVLCSDKTGT LTKNKLSLGE PFTVSGVSGD DLVLTACLAA SRKRKGLDAI 420
  421 DKAFLKALKN YPGPRSMLTK YKVIEFQPFD PVSKKVTAYV QAPDGTRITC VKGAPLWVLK 480
  481 TVEEDHPIPE DVLSAYKDKV GDLASRGYRS LGVARKIEGQ HWEIMGIMPC SDPPRHDTAR 540
  541 TISEAKRLGL RVKMLTGDAV DIAKETARQL GMGTNIYNAE RLGLTGGGNM PGSEVYDFVE 600
  601 AADGFGEVFP QHKYAVVDIL QQRGYLVAMT GDGVNDAPSL KKADTGIAVE GATDAARSAA 660
  661 DIVFLAPGLS AIIDALKTSR QIFHRMYSYV VYRIALSLHL EIFLGLWLII RNQLLNLELV 720
  721 VFIAIFADVA TLAIAYDNAP YSMKPVKWNL PRLWGLSTVI GIVLAIGTWI TNTTMIAQGQ 780
  781 NRGIVQNFGV QDEVLFLEIS LTENWLIFVT RCNGPFWSSI PSWQLSGAVL AVDILATMFC 840
  841 IFGWFKGGHQ TSIVAVLRIW MYSFGIFCIM AGTYYILSES AGFDRMMNGK PKESRNQRSI 900
  901 EDLVVALQRT STRHEKGDA