YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	oxa102
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSVIGRGIK FSSKSHYSVS CFLIATQGAK IRQIHTHNTF FKNFSFAKLG RNQRTSSLIK  60
   61 IHNSSTSFPK SRSEKVVYTP SLPLSSSVLA SFSFLPHNIL QNGLNTLHIW SGLPWWASIA 120
  121 ACAVAMRIAV FPIMLKMMKT SAKLAIINPK VAEHMSVLSK AKAEGNSELM MQATTQIQNL 180
  181 YKVNNVNPLN LLSAPVFQGI LFISFFYALK TMAGVPVEGF TDGGFWWVND LSQPDPLHIF 240
  241 PVANGLLMLL NIELGSETGS NKVAMSPSMK KFFRFLCLAS PLFTMNFPMA IFMYWFPSNV 300
  301 FSVFQGAFLR SSTIRHKLGL PEVPSAMPVP NAQNESFVKS FTDIVHGVQE KGKYPQASEI 360
  361 LDATRFLKTD TNNEQKPTNN STITKATTLS DNSQNDKSSS VTKPTEKKD

Type	Start	End	Confidence
Cytoplasmic	1	75	0.97
Transmembrane Helix	76	97	0.88
Non-Cytoplasmic	98	112	0.84
Transmembrane Helix	113	131	0.94
Cytoplasmic	132	190	0.94
Transmembrane Helix	191	209	0.82
Non-Cytoplasmic	210	235	0.79
Transmembrane Helix	236	255	0.88
Cytoplasmic	256	271	0.94
Transmembrane Helix	272	296	0.90
Non-Cytoplasmic	297	409	0.95