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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NU184_SCHPO
Protein type: Transmembrane
Type Confidence: 0.90
Topology Confidence: 0.71
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDYLLSWSW ILDAFETSDE NLSQNKFEEL LDARIAAFQQ IESPVTGTLN SNKTTEGEEA  60
   61 KLSIYDSSHS ISKSQLESVK KISDITGYNE AQVAYVLLVH QYELNTQYFS QLDNDSVLAQ 120
  121 EFQRRYYAEI ISCWKVLAFL LQACTDADSK WHKMATRLIV SIFQTAQRSG ENAQSTTPSI 180
  181 FCVRIIDYLS KMTSQAAPAS LTFNGEEAIS QWYFFHFNLQ LQLLRVIFLS TYSLVVCNSE 240
  241 MAISWFNCMK KTRYLHDQEF MHLDIDTGFS MCKEITNVAI IISINFISLE KQVLSFKDNP 300
  301 SFFMLSGNTI ISLHDMITQL SNDSIGAAVS LTWGIALHLL SNSPDNIPLI QNSSVVSSKI 360
  361 LQNPQNSFQA LIIAALKYDP FTLIHRIISS LEDDPYIDGY SKIMATLFSS AVSYVKFSDS 420
  421 TMLCATTLFK TPQVYQLFEN NDSVTRLLNF ARARFPFEYS QFVLLLIPTF ACLTSKQLVS 480
  481 SELLHMTTFT QSLPSGFKAY EIIPEPNVTG NALIELQESL HLDSYGFFFP NAERSLPKGT 540
  541 RGRIVSVDTY PPVVMWDLNY SLWEAVGISL NYIVRNGLIN SHKSFVLTVL SSSVPLFQTD 600
  601 VSGACELVHL ASEGLDGELD FINVICDLLD YFLSLSVIED ADYQICVSSL RLLREFTRFA 660
  661 ATDVWAYVTR SLVCVGSEKG ISLEDVIFDY ESINGVYDFT LAFFDLYEIL LDNCISTSVV 720
  721 PDDFSIRLKT DFVKRAMRFL CEVFANYLDW KYARIIQQYQ IGHRFASLIT KLLNVTFGIE 780
  781 YFNPKTTVNK KTLPLRELSH YIVQRFLVQQ DSNRYLHPLL SVMDLINLLY TDIFSTISSP 840
  841 RAKAAKMWLI SSFCAMKTLI CLRGFLNLKP SELERELFSR SPDLFNCLPR LLCCIAPILQ 900
  901 LLSALILAPW PSETPSLLAY MINSTDIVGR VCIQILTNPI QSTNIEGSVW KFLSSIMKGQ 960
  961 QQGLAVLLFS GKKFPLDRMK SLNHNVDVQL TSKSLISLAE KRLDSFSIND ILSQVPVFEF1020
 1021 IFLSRNFWTA SLGNLQQEAN FWNRIVDAIK LPLTVKLDGL SSVAQADLYI LAAHATRITA1080
 1081 IQLHMSKLNK SNSSKKIIID PLKDSMKDLV QHAFTITAYD SNIHNALTRA FKHENGDLHI1140
 1141 SDLRNTGLFP LRYGDNYFYN IKLAKNMLLN TEDTSFKISM MMSANENLSL LDAQAALLRS1200
 1201 WSIFICAFVE FVKEDATLSI LELKIMKWVL KSLAEDTIDV NVVQELSAER AALVFRISQQ1260
 1261 TLAIPISNEV KEHLQSILLL TWKAITTTKF SIYEDSNGEM AYYRPLLHVL YNTLNRLLSE1320
 1321 EKENLSLSVG FVSGLLQLCH RKLSQLFEKA VINPTIEVYG DIVLLNSLHK CIVNSHLIRG1380
 1381 LQSLYISYIN DSFSVDNCLR LFSWSHSLLV DGQPYFADAA LSFLLICSSS PAGAEQIVMN1440
 1441 GFFYSIMESP LSTALSTGGL GLDGSSIQYK IWIRGILPLL FNIVKFLGNR IMNDMREFVL1500
 1501 LAFPQIQYAL LNWCQPPSSI SLASIDESFM IVLLFDLLQQ FNPALLQEIR LAELKIEMLE1560
 1561 ASTI

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