YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mok13
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.08
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.94
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	1058	0.98
Transmembrane Helix	1059	1080	0.75
Cytoplasmic	1081	1279	0.57
Transmembrane Helix	1280	1294	0.08
Non-Cytoplasmic	1295	1893	0.53
Transmembrane Helix	1894	1912	0.42
Cytoplasmic	1913	1929	0.81
Transmembrane Helix	1930	1952	0.82
Non-Cytoplasmic	1953	1961	0.80
Transmembrane Helix	1962	1982	0.93
Cytoplasmic	1983	1990	0.80
Transmembrane Helix	1991	2011	0.93
Non-Cytoplasmic	2012	2019	0.82
Transmembrane Helix	2020	2042	0.88
Cytoplasmic	2043	2054	0.73
Transmembrane Helix	2055	2077	0.83
Non-Cytoplasmic	2078	2098	0.92
Transmembrane Helix	2099	2122	0.88
Cytoplasmic	2123	2144	0.82
Transmembrane Helix	2145	2162	0.92
Non-Cytoplasmic	2163	2179	0.82
Transmembrane Helix	2180	2201	0.89
Cytoplasmic	2202	2208	0.78
Transmembrane Helix	2209	2227	0.84
Non-Cytoplasmic	2228	2250	0.64
Transmembrane Helix	2251	2272	0.77
Cytoplasmic	2273	2279	0.85
Transmembrane Helix	2280	2302	0.89
Non-Cytoplasmic	2303	2329	0.91
Transmembrane Helix	2330	2350	0.96
Cytoplasmic	2351	2358	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNKNILVLN LILSIPRLVF TAKYDERESL WNLNQNQSAT DPLDYWGKWE NHQYHPSPDD  60
   61 WQVPFYTVIL DKWKDGDPRN NEANNTIYEY DIYETGFRNG GDIIGLKDSL DYLEIMGIKV 120
  121 IYIAGTPFLN QPWGADQYSP LDYTILDHHS GTIAQWRDTI EEIHRRGFYL VLDLTISTLG 180
  181 DLIGFRKYLN STTPFSLFEH EAVWKSNVIY PDWNFTNKYD PKCELPRFWG EDGAPVVIDY 240
  241 VGCYDSDFDQ YGDTEAFGTH PDWERQLSKF ASVQDRLREW RPSVSEKLKH FACMIIAMLD 300
  301 VDGFRIDKAT QITVDFLASW AHSVRGCAAT FNKKNFFIPG EVTGSSSYGS IYYGRGRQPD 360
  361 QRPPSILTSL NSSSLKENYF LREPKANALD ASAFHYSLYR AMTRFLQMDG DLQVGHDLPV 420
  421 DFTDLWNAMA VNEDFYNPNT HKVDPRHMLG ITNHDVFRWS AIEFGLERLL LGTMITYFLF 480
  481 PGAPSIYYGD EQGFYVLDNT ANNYLYGRQA MPSSIAWKVH GCYALASDQY PELPVIKAYQ 540
  541 GCNDDWNIMD HFDFAKPELK MFKIFNFIRE QYPALKSGWK SVKLRNWTEY VHFPNSGKTP 600
  601 TEVGVWSIVR GALETLQNFD ARNNTAWNGD IWILYTNQNR TTTLDYQCSS SNSVVSPYAS 660
  661 GLTLKNLIYP FEEYILQESN KYSSNLKSYY GCIPNIEFPP WGFKILIPKK YYVRYPPQIT 720
  721 SFNPQHDSRI YNHNGKQKLV ISFTETMDCN EITSKLQFSS KTESGKVMKV DKETVKCSVS 780
  781 NNSADSYYFG LAPARFHWSG DLINIADGIH EIKLQRVHSQ DHQSMSDSMY KLLLRFGKLD 840
  841 NPMVFSTANR SSSILSQENE KLYINHKAPG ADLFRFSFDY GLHWSEWIDY LSNKTECTEF 900
  901 ANNISLKTWK GHHVIVQYWS RLTASANYIQ EGGLGSLSSF PHLYMNGPYN QWGFDSGIPN 960
  961 RLIYKNCSWH KTFISDVFPT KFQFNVYNFD ESGMPDQKKV YGTIGNSTVL VRLPPSELKE1020
 1021 SVTWIKEAPP SNFLTWEIII SDLTRTYHLI PRGSSTVSII LFSLFLVSPL ICALATMLAF1080
 1081 QKFFYQVRLN KGIEKKQEWK EKLLGPFSRI SQSNINQGFS HQVALNNSVK SVHPKISRKL1140
 1141 ILVATLEYDI PDWDIKIKIG GLGVMAELMG KHLTHHDLIW VVPRVGDVNY PDGQELAPLE1200
 1201 VVVLDQVYEV RVYSHNLRNI TYILLEAPVF RKQTSAEPYP ARMDDLSSAI FYSAWNQCIA1260
 1261 GIIRRYPIDV YHINDYHGAL APCYLLPNVI PCVLSLHNAE FQGLWPLRTQ AEKNEVCAVY1320
 1321 NISTKICTKY IQFGNVFNLL HAGVSYIRIH QKGYGVVGVS NKYGKRSKAR YPIFWGLKKV1380
 1381 GKLPNPDPLD TAQLDDPTNI TEEITIDLTA EAEKRAFKRD AQKWTNLELD DSADLLVFVG1440
 1441 RWSMQKGIDL IADIAPTLLQ DFNAQLITIG PIIDLYGKFA AEKLNALMKK YPKRVYCRPE1500
 1501 FTHLPPCIFS GADFVLIPSR DEPFGLVAVE FGRKGALGIG ARVGGLGQMP GWWYSVESNA1560
 1561 TSHVLQQFEE ACRKALSSSA EKRALLRAKS AKQRFPVLEW ISKLDHLMDN CIRLNVGQRQ1620
 1621 QGSSSHSMKF RSKNDLSSIK LSTKEGLENE ENELKDKAPP NEPNVGSLFL FNKSSMGSVG1680
 1681 GPGHYKATDL SQELETNDQD IEYNEFYSQL DTSTSDIFQD TSVDGFPDLQ VSSDINVRND1740
 1741 RLSSFVMSSE DLRSSDGHPE NSDSVLETIS SVHHRSPINQ VVRNLNESQL SLDSVISMNL1800
 1801 NKEFALTKTE NDFTDDNGRA LNYFSQKLEE LDPKNSVNEL CIETFILKMK KEWYDGLRNI1860
 1861 RFGIQRPNLL IYDEDKKFIN TEHFLGSKVN LNSVTSLGNF NGSSPNSFLF LLKNRTMRIK1920
 1921 CFMQMRIGDW PVYSIFLSVG QILAATSYQL VLLSGSSAQF STQLYIVGSI YTVSSVFWWY1980
 1981 LYRMLPSVAS LSLPFLLYCA SFLLIGISSF INENMYLRLW ISHIASWIYA VASASGSLYF2040
 2041 SLNFGDEAGA GVVSWIVRAC IVQGFQQIWA CCLWYWGSYI DRSMQECHSF PHEVYPLGLI2100
 2101 AVFSWPLALV MLLFAILLIF GLPDYYWESP GNIPAFYTAL LRRKLVLWFF VATILQNYWL2160
 2161 STLYGRSWKY LWGGSLLAPW KMLTIAFFLF LSMWIIMLMF LGRKSLTHSW LLPVFGVGLG2220
 2221 SPRWLQMMWG TSNIGVYLPW AGVAGPIVGR ILWIWLGVLD SVQGVGVGMI LLQTLTRRHI2280
 2281 ATTLIAGQII GTLTSMLARA TAPNRLGPGL VFLDLTSWRF EDGAKIFRSA PFWICLISQI2340
 2341 AVSAGYLLFF RRENLSRP