YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MAE1_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.99
Transmembrane Helix	34	57	0.88
Non-Cytoplasmic	58	67	0.82
Transmembrane Helix	68	89	0.92
Cytoplasmic	90	105	0.93
Transmembrane Helix	106	127	0.93
Non-Cytoplasmic	128	140	0.89
Transmembrane Helix	141	161	0.94
Cytoplasmic	162	173	0.77
Transmembrane Helix	174	192	0.96
Non-Cytoplasmic	193	208	0.77
Transmembrane Helix	209	233	0.80
Cytoplasmic	234	242	0.93
Transmembrane Helix	243	265	0.90
Non-Cytoplasmic	266	289	0.83
Transmembrane Helix	290	312	0.88
Cytoplasmic	313	319	0.83
Transmembrane Helix	320	342	0.87
Non-Cytoplasmic	343	351	0.78
Transmembrane Helix	352	371	0.92
Cytoplasmic	372	438	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGELKEILKQ RYHELLDWNV KAPHVPLSQR LKHFTWSWFA CTMATGGVGL IIGSFPFRFY  60
   61 GLNTIGKIVY ILQIFLFSLF GSCMLFRFIK YPSTIKDSWN HHLEKLFIAT CLLSISTFID 120
  121 MLAIYAYPDT GEWMVWVIRI LYYIYVAVSF IYCVMAFFTI FNNHVYTIET ASPAWILPIF 180
  181 PPMICGVIAG AVNSTQPAHQ LKNMVIFGIL FQGLGFWVYL LLFAVNVLRF FTVGLAKPQD 240
  241 RPGMFMFVGP PAFSGLALIN IARGAMGSRP YIFVGANSSE YLGFVSTFMA IFIWGLAAWC 300
  301 YCLAMVSFLA GFFTRAPLKF ACGWFAFIFP NVGFVNCTIE IGKMIDSKAF QMFGHIIGVI 360
  361 LCIQWILLMY LMVRAFLVND LCYPGKDEDA HPPPKPNTGV LNPTFPPEKA PASLEKVDTH 420
  421 VTSTGGESDP PSSEHESV