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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: HRP3_SCHPO
Protein type: Globular with Signal Peptide
Type Confidence: 0.95
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSAIALAL SSSKAIEQLD HVQTETPNLK QEMSESPSNS GVASKRKLQS TEWLDPELYG  60
   61 LRRSGRTRSN PGRYVDTDDQ EDVFPSKHRK GTRNGSSFSR HRTIRDLDDE AESVTSEESE 120
  121 SDDSSYGGTP KKRSRQKKSN TYVQDEIRFS SRNSKGVNYN EDAYFESFEE EEEEEMYEYA 180
  181 TEVSEEPEDT RAIDVVLDHR LIEGHDGSTP SEDYEFLIKW VNFSHLHCTW EPYNNISMIR 240
  241 GSKKVDNHIK QVILLDREIR EDPTTTREDI EAMDIEKERK RENYEEYKQV DRIVAKHLNS 300
  301 DGSVEYLVKW KQLLYDFCTW EASSIIEPIA ATEIQAFQER EESALSPSRG TNYGNSRPKY 360
  361 RKLEQQPSYI TGGELRDFQL TGVNWMAYLW HKNENGILAD EMGLGKTVQT VAFLSYLAHS 420
  421 LRQHGPFLVV VPLSTVPAWQ ETLALWASDM NCISYLGNTT SRQVIRDYEF YVDGTQKIKF 480
  481 NLLLTTYEYV LKDRSVLSNI KWQYMAIDEA HRLKNSESSL YEALSQFKNS NRLLITGTPL 540
  541 QNNIRELAAL VDFLMPGKFE IREEINLEAP DEEQEAYIRS LQEHLQPYIL RRLKKDVEKS 600
  601 LPSKSERILR VELSDLQMYW YKNILTRNYR VLTQSISSGS QISLLNIVVE LKKASNHPYL 660
  661 FDGVEESWMQ KINSQGRRDE VLKGLIMNSG KMVLLDKLLS RLRRDGHRVL IFSQMVRMLD 720
  721 ILGDYLSLRG YPHQRLDGTV PAAVRRTSID HFNAPNSPDF VFLLSTRAGG LGINLMTADT 780
  781 VIIFDSDWNP QADLQAMARA HRIGQKNHVM VYRLLSKDTI EEDVLERARR KMILEYAIIS 840
  841 LGVTDKQKNS KNDKFSAEEL SAILKFGASN MFKAENNQKK LEDMNLDEIL EHAEDHDTSN 900
  901 DVGGASMGGE EFLKQFEVTD YKADVSWDDI IPLTEREKFE EEDRLREEEE ALKQEIELSS 960
  961 RRGNRPYPSS AVESPSYSGT SERKSKKQML KDEVLLEKEI RLLYRAMIRY GSLEHRYNDI1020
 1021 VKYADLTTQD AHVIKKIAAD LVTASRKAVS AAEKDLSNDQ SNNKSSRKAL LITFKGVKNI1080
 1081 NAETLVQRLN DLDILYDAMP TSGYSNFQIP MHVRSVHGWS CQWGPREDSM LLSGICKHGF1140
 1141 GAWLEIRDDP ELKMKDKIFL EDTKQTDNSV PKDKENKEKK VPSAVHLVRR GEYLLSALRE1200
 1201 HHQNFGIKSS PAISTNGKTQ PKKQTANRRQ SGKPNVKSAQ KIESATRTPS PAISESRKKP1260
 1261 SSKDTKIETP SREQSRSQTA SPVKSEKDDG NVSLNAEQKA RCKELMYPVR KHMKRLRKDS1320
 1321 SGLGRAELVK LLTECLTTIG KHIEKTVNDT PSEEKATVRK NLWMFACYFW PKEEVKYTSL1380
 1381 ISMYEKMK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle