YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPT_SCHPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	72	0.58
Transmembrane Helix	73	94	0.88
Non-Cytoplasmic	95	122	0.84
Transmembrane Helix	123	143	0.92
Cytoplasmic	144	154	0.69
Transmembrane Helix	155	173	0.81
Non-Cytoplasmic	174	195	0.64
Transmembrane Helix	196	218	0.85
Cytoplasmic	219	224	0.54
Transmembrane Helix	225	245	0.81
Non-Cytoplasmic	246	253	0.57
Transmembrane Helix	254	275	0.89
Cytoplasmic	276	282	0.56
Transmembrane Helix	283	305	0.86
Non-Cytoplasmic	306	311	0.53
Transmembrane Helix	312	331	0.67
Cytoplasmic	332	413	0.92
Transmembrane Helix	414	437	0.85
Non-Cytoplasmic	438	446	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIESCFNVGI WATGLALLMN QGQSPLLSNV GLSVLAYKAT AMFIPRVGPS FIKRGFSGKD  60
   61 MNKVEKYVIP ETMGAVSALV YFMCMIIFIP VLFYKYLVPN HNPNLPSDGS VAEVAKSQFP 120
  121 HDLLGAYLSA LLSILSVSLL GILDDLFDIR WRHKFFLPAI AAIPLLVVYY VDYGVTYVSV 180
  181 PSIVRPFLKR SLINLGFLYY FYMAAVAIFC PNSINIIAGV NGVEAGQSLV LALVIACNDL 240
  241 FYVLSPKNKD ALRAHLLSLY LVLPLIGVTA GLLKYNWWPS RVFVGDTFCY FAGMVMAVVG 300
  301 ILGHFSKTLM LFFIPQIFNF ALSVPQLFGL VECPRHRLPK LNVKTGLLEN SYTEFSLNEH 360
  361 PLPKKTLLTI SIFEKLRLIR VEYDPSTGRP LRCTNFTIIN FVLYHLGPMR EDHLTICIMG 420
  421 LQLLTGIFGL IIRHFVAPLV YPEDNI