YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MYCT_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	67	0.97
Transmembrane Helix	68	86	0.97
Non-Cytoplasmic	87	110	0.82
Transmembrane Helix	111	130	0.94
Cytoplasmic	131	138	0.75
Transmembrane Helix	139	158	0.95
Non-Cytoplasmic	159	163	0.87
Transmembrane Helix	164	186	0.92
Cytoplasmic	187	196	0.86
Transmembrane Helix	197	219	0.87
Non-Cytoplasmic	220	228	0.79
Transmembrane Helix	229	248	0.94
Cytoplasmic	249	313	0.96
Transmembrane Helix	314	335	0.86
Non-Cytoplasmic	336	350	0.84
Transmembrane Helix	351	374	0.93
Cytoplasmic	375	381	0.96
Transmembrane Helix	382	405	0.89
Non-Cytoplasmic	406	493	0.98
Transmembrane Helix	494	516	0.87
Cytoplasmic	517	532	0.79
Transmembrane Helix	533	554	0.86
Non-Cytoplasmic	555	561	0.75
Transmembrane Helix	562	583	0.92
Cytoplasmic	584	637	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRKASEDVE YTLRSLSSLM GERRRRQPEP GAPGGERSLL AAESAASLQG AELERAARRQ  60
   61 FQRDETPAFV YAAAAFSALG GFLFGYDTGV VSGAMLLLRR QMRLGAMWQE LLVSGAVGAA 120
  121 AVAALAGGAL NGALGRRSAI LLASALCTVG SAVLAAAANK ETLLAGRLVV GLGIGIASMT 180
  181 VPVYIAEVSP PNLRGRLVTI NTLFITGGQF FASVVDGAFS YLQKDGWRYM LGLAAIPAVI 240
  241 QFLGFLFLPE SPRWLIQKGQ TQKARRILSQ MRGNQTIDEE YDSIRNSIEE EEKEASAAGP 300
  301 IICRMLSYPP TRRALAVGCG LQMFQQLSGI NTIMYYSATI LQMSGVEDDR LAIWLASITA 360
  361 FTNFIFTLVG VWLVEKVGRR KLTFGSLAGT TVALTILALG FLLSAQVSPR VTFRPTAPSG 420
  421 QNATCTEYSY CNECMLDPDC GFCYKINSSA VIDSSCVPVN KASTNEAAWG RCENETKFKA 480
  481 EDVHWAYSFC PTPYSWTALV GLVLYLVFFA PGMGPMPWTV NSEIYPLWAR STGNACSAGI 540
  541 NWIFNVLVSL TFLHTAEYLT YYGAFFLYAG FAAVGLLFVY GCLPETKGKK LEEIESLFDH 600
  601 RLCTCGTADS DEGRYIEYIR VKGSNYHLSD NDASDVE