YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ght4
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.76
Transmembrane Helix	8	31	0.83
Non-Cytoplasmic	32	54	0.85
Transmembrane Helix	55	79	0.81
Cytoplasmic	80	86	0.78
Transmembrane Helix	87	107	0.89
Non-Cytoplasmic	108	114	0.52
Transmembrane Helix	115	134	0.64
Cytoplasmic	135	147	0.48
Transmembrane Helix	148	170	0.73
Non-Cytoplasmic	171	177	0.48
Transmembrane Helix	178	200	0.84
Cytoplasmic	201	261	0.53
Transmembrane Helix	262	280	0.45
Non-Cytoplasmic	281	299	0.72
Transmembrane Helix	300	322	0.91
Cytoplasmic	323	329	0.73
Transmembrane Helix	330	349	0.93
Non-Cytoplasmic	350	364	0.74
Transmembrane Helix	365	390	0.84
Cytoplasmic	391	402	0.72
Transmembrane Helix	403	425	0.76
Non-Cytoplasmic	426	432	0.66
Transmembrane Helix	433	451	0.82
Cytoplasmic	452	557	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRTLTSVLV VFISMAGWLG GADTGSISGI LGMRDFQSRF ADRYNPITNS YSYSAWRQAL  60
   61 LTGTVNAGCL FGAMLSSPFT EAIGKKYSIA FFSGCYIIGQ ILLVTAVPSW VQIMVGKLFT 120
  121 GLTIGALSVL SPGYQSEVAP PQIRGAVVST YQLFQTCGTL IAACINMGTH KLRKTASWRT 180
  181 SFGINILWGI FLMVGVLFLP ESPRYLIYKG RDEEALRIMC QTAELDPESE IIQTNFNTIK 240
  241 SDIEMEMAGG KARWPEVFGK EVRYRTVLGF LTMLLRELIG NNYYFYYATQ VFKGTGMTDI 300
  301 FLPAVILGAI NFGTTFGALY TIDNLGRRNP LIFGAAFQSI CFFIYAAVGD RKLIYKNGTS 360
  361 DHRAGAVMIV FSCLFLFSYC CSWGPMGWVI VGETFPIRYR SKCAAVATSG NWLGNFMVSF 420
  421 FTPFISNSIG FKLGYIYACI NMTSAFQIFL MAKETKGLTL EEVNELYESD IKPWDSYKYV 480
  481 RQIESRRIHF SKEEEKRERE KSKGYRGQEE RFIENADGAD NDDSSASSES FASAGAHSRS 540
  541 VFPRRSNVSE ESHPTWV