YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	chs1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	504	0.91
Transmembrane Helix	505	524	0.86
Cytoplasmic	525	539	0.66
Transmembrane Helix	540	554	0.85
Non-Cytoplasmic	555	556	0.30
Transmembrane Helix	557	576	0.58
Cytoplasmic	577	579	0.39
Transmembrane Helix	580	603	0.84
Non-Cytoplasmic	604	610	0.43
Transmembrane Helix	611	635	0.86
Cytoplasmic	636	655	0.45
Transmembrane Helix	656	682	0.74
Non-Cytoplasmic	683	691	0.44
Transmembrane Helix	692	712	0.66
Cytoplasmic	713	793	0.79
Transmembrane Helix	794	815	0.88
Non-Cytoplasmic	816	830	0.71
Transmembrane Helix	831	853	0.92
Cytoplasmic	854	859	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRWFKKTLP RPPDEEESAG LTNKDIVETN HLYPTITNLS LNSDTSSILF DKNKKPLKPK  60
   61 IIIPDKEFDL DYYLKDETES IQSPFEGFTA QPNFSNFNKQ GNTMNREANF QRTNEKIQRN 120
  121 KSIKRVKLFH GNLILDCPIP KKLLVTLPQQ TEREFAYMRY SAATCDPQDF SKSLFTLRQP 180
  181 LFFQPRKTEI CIAITMYNED EVLFARTMHS VMKNISHLCT RKNSQVWGKD AWKKVVVCII 240
  241 SDGRTKIHPR TLAYLAAIGV YQDGIAKNQV NDKEVKAHIY EYTTQLSIDP NLKFKGSDRG 300
  301 IVPVQMIFCL KEKNQKKLNS HLWFFQAFCP ILKPEVCILL DAGTRPGDQS IYHLWKSFDL 360
  361 NPQVAGACGE IVVMKGKLGS GLINPLVATQ NFEYKMSNIL DKPVESVFGF ISVLPGAFSA 420
  421 YRFEALQNDS QGNGPLASYF KGELQNTGKS GIFEANMYLA EDRILCFELV SKKNEAWILH 480
  481 YVKSAYADTD VPDRIPEFVL QRRRWLNGSF FAAAYAICHY YRFFRTSHTI SRKFMLSIEF 540
  541 IYQLATIVFG WFNIGNFFII FYILTSSLAS TSANFLPGEI LFRIAIWIYA SLLVTCFVLA 600
  601 LGNRPHGSPN FYLSMVIMYS ILMGYLLFCS GWIAYRAISD AIHNASSTSS SYTSALLNSN 660
  661 VFINIVISLS STYGMYLVVS IISFDPWHMF TSFVQYIFLS IMYTNVLNVY AFCNTHDVSW 720
  721 GTKGDHFTNN DLGVARLLQK GADVEIAIPT NQSDIDAKYE DAVKLLASPS LEFNSPIINH 780
  781 GEQEDFYKNF RTYVVLTWIL SNLFLVGIVL SIPKINGISI SNNETSAYLS FLLWSVVAFS 840
  841 VFRFIGCIFY LFIRLCTGE