YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	bgs3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	426	0.71
Transmembrane Helix	427	447	0.81
Cytoplasmic	448	464	0.63
Transmembrane Helix	465	489	0.85
Non-Cytoplasmic	490	503	0.64
Transmembrane Helix	504	524	0.94
Cytoplasmic	525	537	0.61
Transmembrane Helix	538	561	0.84
Non-Cytoplasmic	562	593	0.67
Transmembrane Helix	594	616	0.75
Cytoplasmic	617	649	0.60
Transmembrane Helix	650	665	0.51
Non-Cytoplasmic	666	666	0.45
Transmembrane Helix	667	694	0.77
Cytoplasmic	695	1259	0.75
Transmembrane Helix	1260	1290	0.71
Non-Cytoplasmic	1291	1323	0.47
Transmembrane Helix	1324	1349	0.80
Cytoplasmic	1350	1407	0.48
Transmembrane Helix	1408	1432	0.75
Non-Cytoplasmic	1433	1441	0.58
Transmembrane Helix	1442	1460	0.91
Cytoplasmic	1461	1529	0.85
Transmembrane Helix	1530	1552	0.91
Non-Cytoplasmic	1553	1570	0.90
Transmembrane Helix	1571	1596	0.85
Cytoplasmic	1597	1606	0.82
Transmembrane Helix	1607	1629	0.89
Non-Cytoplasmic	1630	1636	0.70
Transmembrane Helix	1637	1656	0.83
Cytoplasmic	1657	1702	0.75
Transmembrane Helix	1703	1721	0.58
Non-Cytoplasmic	1722	1722	0.32
Transmembrane Helix	1723	1744	0.71
Cytoplasmic	1745	1765	0.75
Transmembrane Helix	1766	1790	0.89
Non-Cytoplasmic	1791	1826	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYKKGEHSP SSSIQILSDD ATINSNYAYG EQLQSNDQYN NIQHPAPSFA NPFIHEQDDS  60
   61 YSDILEEEPD EDAYDSPERP SSTEEFISQD ESNISAGSSF MFPYNRGHPL SKRHDSIMVD 120
  121 EFGHEYIVEG DSIASADEAI DYDALYASWT AETKAPILAI DIENIYIELA MKFGFQWDNM 180
  181 RNMFDYLMVM LDSRASRMTP QEALLTLHAD YIGGPQSNFK KWYFACKMDQ FDLKSGVLSF 240
  241 ISRDPSTQVP YKDMSSCEAL WISRMDELSN YERIEQLALY LLCWGEANNV RFMPECLCFI 300
  301 YKVAYDYLIS PSFKEQKNPA PKDYFLDNCI TPLYNLMHDQ QYEIRDQKYV RKEKDHASII 360
  361 GYDDINQMFW YSKGLKALLL SDGSRIMDAD VASRYFLLAD IQWQRVCYKS FRESRTWLHF 420
  421 LHNFSRIWIL HISVFWYFTV YNSPTIYTPN FHYLEGTQPA RAAKWCAPAL AGAVASFISF 480
  481 LALILEAYFV PRNNPGAQPV IPRLIFVSIL IALNIVPAAF IFGFSNATQQ HYRSREIVGY 540
  541 VHFFFSIGCV AYQSFIPLPF LLGPRFKFRS SSRKYLANSY FTNDIASLPW GRTLLSAALW 600
  601 ITVFIAKFVE SYYFLTLSVR DPIRFLQRMK PYDCYDFMIG ASLCSHQPKF LLSLVYLTDL 660
  661 VLFFLDTYLW YMLISTMFSI AYSFYMGSAI WTPWRVIFSN LPRRIYFTLL AYKDLSTEFK 720
  721 PKIYVGQIWN SIMISMYREH LLSLEHLKGL LYQQVGSEYF GKQTFQSPKF FMEAAKGLNK 780
  781 WDAFFRRNSE AERRISFFAQ SLGGKIPDAV PVPKMPSFTV LIPHYGEKIL LSLREIIREQ 840
  841 DPMSRITLLE YLKQLYPNDW DNFVQDTKLM AGDVGVEETK SDVKSEKGKK QGTVKEDLPF 900
  901 YCIGFKSTAP EYTLRTRIWA SLRSQTLYRT ASGMMNYSRA LKLLYRVEQP NLLDDCDGNF 960
  961 ERLEHQLEQM AYRKFRLCIS MQRYAKFNRD EYENAEFLLR AHPELQIAYL DQDPSEDGEE1020
 1021 PKVYATLING FCPFENGRRL PKYRIRLSGN PILGDGKADN QNMALPFVRG EYLQLIDANQ1080
 1081 DNYIEECMKI RNVLSEFEEM DCATLTPYTK KGNARHPVAM LGAREYVFSE NSGILGDVAA1140
 1141 GKEQTFGTLF SRSLALIGGK LHYGHPDFLN TIFMTTRGGV SKAQKGLHVN EDIYAGMTAL1200
 1201 QRGGRIKHCD YFQCGKGRDL GFGTIINFTT KIGTGMGEQS LSREYFYLGT QLPFFRMLSF1260
 1261 YYAHAGFHLN NVFIMISMQL LMLVFVNLGA MYHTVEICDY QAGAAINASL YPPGCYMLKP1320
 1321 VLDWIRRCII SIFIVFFISF LPLVVHDLLE KGVIRAVARL CKQIFSLSPM FEVFVTQNYA1380
 1381 NSIFTNLTYG GARYIATGRG LATTRVPFSV LYSLYTGSSI YLGSRLIMML LFGTMTVWTT1440
 1441 HYVYFWVTMF ALVICPFIYN PHQFSFVDFF VDYREFLRWL SRGNTKGHAH SWIGFCRLAR1500
 1501 TRITGVNRKV KGSPSNKLTM DMPRAGLRNV IFTEVFLPAC FAFFTICAYT FMNSQPGLED1560
 1561 KSRAVNGFIR IWIMAALPIA ISTAALLILL MFSCMLGPLL RKCSKRYGAV LAALAHAVSV1620
 1621 FGLVFTFEAL WFLEAWSFSK TVLGCIVIFA IHRLVFKLVV VFLLPREVAS GENNYSWWDG1680
 1681 HWFGRKGIPY MPIQFIREFM CKVVEMNLFA MDFILSHCIL FSLTPILCIP FIDIPHSVLL1740
 1741 FWLHPSRQIR PPIYTRKQNQ LRRRTFYRYS LLFFALLCTF VAMIVVPLVL DQKLSYQFKF1800
 1801 ENSVKFFRLM QPSLGVLPNT NKNTSE