YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	bgs1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	377	0.65
Transmembrane Helix	378	401	0.87
Cytoplasmic	402	413	0.69
Transmembrane Helix	414	436	0.90
Non-Cytoplasmic	437	447	0.60
Transmembrane Helix	448	468	0.90
Cytoplasmic	469	494	0.64
Transmembrane Helix	495	518	0.68
Non-Cytoplasmic	519	577	0.60
Transmembrane Helix	578	603	0.85
Cytoplasmic	604	1167	0.70
Transmembrane Helix	1168	1182	0.48
Non-Cytoplasmic	1183	1183	0.14
Transmembrane Helix	1184	1203	0.75
Cytoplasmic	1204	1235	0.50
Transmembrane Helix	1236	1256	0.90
Non-Cytoplasmic	1257	1277	0.48
Transmembrane Helix	1278	1304	0.59
Cytoplasmic	1305	1317	0.51
Transmembrane Helix	1318	1347	0.57
Non-Cytoplasmic	1348	1349	0.44
Transmembrane Helix	1350	1368	0.79
Cytoplasmic	1369	1437	0.95
Transmembrane Helix	1438	1460	0.92
Non-Cytoplasmic	1461	1478	0.91
Transmembrane Helix	1479	1504	0.87
Cytoplasmic	1505	1514	0.89
Transmembrane Helix	1515	1535	0.94
Non-Cytoplasmic	1536	1544	0.72
Transmembrane Helix	1545	1564	0.83
Cytoplasmic	1565	1584	0.77
Transmembrane Helix	1585	1601	0.46
Non-Cytoplasmic	1602	1620	0.50
Transmembrane Helix	1621	1640	0.69
Cytoplasmic	1641	1676	0.72
Transmembrane Helix	1677	1698	0.92
Non-Cytoplasmic	1699	1729	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQYWREQEG RGLFEDDANS YVSDDDTMSS LTRMIYDKNS SRDALHSDYD SSSFNVDSSS  60
   61 VAYPAWNQAG EEAPVTMEGV QEILLDLTNK LGFQKDNMRN IFDYVMVLLD SRASRMSPSS 120
  121 ALLTIHADVI GGEHANFSKW YFASHFNDGH AIGFHDMSSP IVETMTLKEA EQAWRDQMAA 180
  181 FSPHRMMVQV CLYFLCWGEA NNVRFVPECL CFIFECAYDY YISSEAKDVD AALPKEFYLD 240
  241 SVITPIYRFI HAQLFEILDG KYVRRERDHS QIIGYDDINQ LFWSYKGLQE IMCADKTPLL 300
  301 DLPPFMRYRH LSDVEWKSCF YKSYYEYRSW FHNVTNFSRI WVMHISAYWY YSAYNSPNLY 360
  361 TKNYHIRLNN KPPASCRWTA CGLAGAIASF ITLAAVVFEY IHVPRRYHSA RRLWPSMLLL 420
  421 ISTLLLNIAP VVFIFASSTK EQHYASRLVV GIVHFFFSLV CVVYYSITPL RNLVGFTTKR 480
  481 SGKNLANRFF TANFTPTSKT GAFVSWCLWI TVLVAKFLES YFFLTLNLAD SIRFLGAMRP 540
  541 YDCRDYILGA GLCKAQPKIL LSLLYLTDLS LFFLDTYLWY ILISTIYSLA YAFCLGISVW 600
  601 TPWRELFYRV PRRIYTKLLY TDDMEIVFKP KVLISQVWNA IIISMYREHL ISRTQIQELL 660
  661 YHQVPSEKAG YHTLRAPNFF YSQQVKHYKQ DLFPANSEAA RRISFFAQSL AESIPKTSSI 720
  721 DAMPTFTVLV PHYSEKILLS LREIIREEDQ LSRVTLLEYL KQLYPVEWRN FVDDTKLLAD 780
  781 ENDSVIGSID NEKNGVNKAY DLPFYCVGFK SATPEYTLRT RIWASLRTQT LYRTINGFSN 840
  841 YSRAIKLLYR TETPELVEWT NGDPVRLDEE LDLMANRKFR FCVSMQRYAK FTKEEAENAE 900
  901 FLLRAYPDLQ IAYMDEDPQS RHNDERHLYS VLIDGHCPIM ENGKRRPKYR IRLSGNPILG 960
  961 DGKSDNQNMS IPYIRGEYVQ MIDANQDNYL EECLKIRSIL AEFEQLTPPL HSPYSVNAKA1020
 1021 ADNHPVAILG AREYIFSENT GMLGDVAAGK EQTFGTLFAR ILSLIGGKLH YGHPDFINVL1080
 1081 FMITRGGVSK AQKGLHVNED IYAGMIALQR GGRIKHCDYY QCGKGRDLGF GSILNFTTKI1140
 1141 GTGMAEQMLS REYFNLGTQL PFDRFLSFFY AHAGFHVNNM VIMFSLQLLM LVIINLGAMY1200
 1201 TVVPVCRYRQ FDSLTASLYP EGCYQLKPVL EWLKRCILSI FIVFGIAFVP LAVCELGERG1260
 1261 AIRMVIRLAK QIFSLSPIFE IFTCQIYAQS LIANLTFGGA RYIGTSRGFA TVRVPFSLLY1320
 1321 SRFSGPSLYF GSRLMYMLLF GSITAWLPHY IYFWITLTAL CISPFLYNPH QFAWTDFFVD1380
 1381 YREFMRWLFR ENSRNQANSW IGNCQLCRTR VTGYKRKIYG KKADKIAMDS PRARITTMFY1440
 1441 GEILGPLGTL FFTCIPFLFI NSQPGNDDET QSTNAFIRLI IMSVAPLVLS AIIAFFFFCL1500
 1501 GIMLRPILGD RSKTYGVYLA GVAHFLFVCV DVVVFEVLGY LEGWSFSKTL LGFVAIISIH1560
 1561 RFAHKFFIIC FLSREFRHDG ANLAWWSGRW NGQGFGYMVL TQPWREFVCK TTELNMFAGD1620
 1621 FLLSHLLLFL QAPVILIPYI DKLHSIILFW LVPSRQIRPP IYTIRQNKLR RQIVLRYATL1680
 1681 YFSLFIAFFV LLILPFVFGK SAAGTSMDKF NLIQPATKIV YSSTKNSSV