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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPCC1672.11c
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPKMIRSK RSTSSIASKN SLNSYLASSL MSHDSIFDGP GLGTSIPSSV SSFHHQTLRP  60
   61 SSDASVSQFS MDYLQSEYNL NRYNDGESIA ASRDYQSLLR DNGSGVYSDE EEITEMMLEE 120
  121 LNIHPVLRRE SVGEAAGLSE DGCCQILYLV EEDLEVGIAG YKTNKSRYRL YQAICLLTLG 180
  181 LAYLIFRWLP KYFIRFVGTR EPLATADWLT IETQWGELSK LDIQIQPYEN SLSSIFGASI 240
  241 RVAAPEGTEN DPFIENFRYV NYRYMKLIFH PLLDRFLIQQ DWKDPRWIRD TSVVKEGLER 300
  301 DAINDRLCIF GENLIDLELK SVSQLLIDEV LHPFYIFQVF SIILWSMDSY YYYAICILII 360
  361 SVVSILGSLI ETRKTLRRMR EMSRFTCPVR VYRDGFWTSI SSTDLVIGDV FEISDPELTI 420
  421 FPADALLLSG DCIVNESMLT GESIPVSKIP ATDQSMKELF SFSKNIPASL CKHFLFSGTK 480
  481 IIQVRKPFVN EKEEGASLAM VVRTGFNTTK GALVRSMIFP KPTNFSFYRD SFRFITAMFI 540
  541 IALIGFVFSS INLLTLGVPI ATIIIRALDL ITIVVPPALP ATLTIGTTFA ISRLRKQGIF 600
  601 CISPQRVNVS GKLDLISFDK TGTLTEDGLD IMGVSVIEGS ELGDLRSNSG NLCSKDLLSN 660
  661 DSPSNLLYTM ATCHMLRYVD GELVGDPLDI KMFKFTHWSY SEENFLNKKM SSEQAEDAAY 720
  721 VRTQQLIPPT VSPPWNSPSN NYTESDLELG IVRTFEFVSQ LRRMAVIVKH GKFKKMDAYV 780
  781 KGAPEIMPSI CKPESFPANY QEVLDYYTHN GFRVIACASK QLENCTWAKA QRMKREQVEC 840
  841 DLDFCGFIVF ENKLKSTTAT VIRELNDARI RTVMCTGDNV LTSICVGKRC GMLPEDGYVF 900
  901 LPRFDEESES ADEASRQLVW QAIENNEIFL DPHTLRPNVD FADHEPVSIE LARLKDFHIA 960
  961 LTGDVFRWLV DYAPLNVFHH ILLKAQIFAR MSPSEKNELV SCFQNLNYCV GFCGDGANDC1020
 1021 GALKAADVGI SLSEAEASVA APFTSKWFEI TCVLDVIKDG RAALVTSFSC FQYMALYSAI1080
 1081 QFITVSILYT TNSNLGDFQF LFIDLVIILP IAVFMGRSRP YHRLAHKRPT ANLVSKRILS1140
 1141 PLIGQIVLIC IIQYITLRIV RREPWYIPPP ANSSDTNITN SDVTALFLIS CFQYIFIGVV1200
 1201 LSIGPPYREK VWRNYSFTAV VVVLLILTVK LIRLQNHKNF FMKLFQLTPT SKSFQNFLIF1260
 1261 AGVIYYLLAA SGQNYIFISM TNFISHLNNR LLNRRTKVSK KLYKRLFADL QNEQV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle