YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	alg8
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	59	0.54
Transmembrane Helix	60	80	0.83
Non-Cytoplasmic	81	97	0.55
Transmembrane Helix	98	120	0.68
Cytoplasmic	121	129	0.40
Transmembrane Helix	130	146	0.43
Non-Cytoplasmic	147	149	0.59
Transmembrane Helix	150	168	0.85
Cytoplasmic	169	175	0.76
Transmembrane Helix	176	200	0.78
Non-Cytoplasmic	201	219	0.80
Transmembrane Helix	220	241	0.93
Cytoplasmic	242	258	0.77
Transmembrane Helix	259	279	0.72
Non-Cytoplasmic	280	313	0.82
Transmembrane Helix	314	332	0.88
Cytoplasmic	333	339	0.70
Transmembrane Helix	340	359	0.91
Non-Cytoplasmic	360	364	0.64
Transmembrane Helix	365	379	0.63
Cytoplasmic	380	389	0.41
Transmembrane Helix	390	405	0.60
Non-Cytoplasmic	406	407	0.47
Transmembrane Helix	408	429	0.59
Cytoplasmic	430	441	0.58
Transmembrane Helix	442	464	0.83
Non-Cytoplasmic	465	475	0.66
Transmembrane Helix	476	497	0.90
Cytoplasmic	498	501	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKLSMLYNA AIASTFVKVF LFPSYRSTDF EVHRNWLAIT HSLPISEWYK SSISEWTLDY  60
   61 PPFFAYMECV LSWIAYFFGF DKAMLDPYNL NYVSPSTVVF QRGSVIVLEL VLLFALREYV 120
  121 LSSNVKDQRN ALLTAIDIFL SPGLLIIDHI HFQYNGFLFG LLLWSIVLAK PEKNMLLSAA 180
  181 IFSALICFKH IFLYVAPAYF VYLLRVYCFT PNFRPQFLNI LKLGSTVISI FLLAFGPWIY 240
  241 MKQIPQLLSR LFPFSRGLCH AYWAPNFWAL YSFVDRVAFA VLPRFGYALN QGTSINAPTR 300
  301 GLVGESSFAV LPNIPPALTF YICLGLQITV LIKLFIKPTW RVFVGAVTLC GWISFLFGWH 360
  361 VHEKAILMVI LPFSILSLID RRYLEAFRPL AVSGYLSLLP LLFTLNEAPI KYLFTGAWIA 420
  421 MLLTFDKCAP VPVKRVFLLN RVNIAYISGF VPLFIYNCFI HKLVMGDKFE FLPLMLLSTY 480
  481 AAWGIFWSFV SLLWLYFTDL K