YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	aap1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	72	0.96
Transmembrane Helix	73	92	0.89
Non-Cytoplasmic	93	102	0.74
Transmembrane Helix	103	127	0.85
Cytoplasmic	128	140	0.81
Transmembrane Helix	141	162	0.76
Non-Cytoplasmic	163	182	0.82
Transmembrane Helix	183	202	0.94
Cytoplasmic	203	213	0.80
Transmembrane Helix	214	235	0.92
Non-Cytoplasmic	236	254	0.85
Transmembrane Helix	255	277	0.84
Cytoplasmic	278	296	0.92
Transmembrane Helix	297	318	0.92
Non-Cytoplasmic	319	346	0.89
Transmembrane Helix	347	369	0.88
Cytoplasmic	370	389	0.94
Transmembrane Helix	390	409	0.95
Non-Cytoplasmic	410	417	0.76
Transmembrane Helix	418	436	0.94
Cytoplasmic	437	463	0.88
Transmembrane Helix	464	486	0.92
Non-Cytoplasmic	487	494	0.84
Transmembrane Helix	495	515	0.93
Cytoplasmic	516	594	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSFTESKKL DEIESPVPEI IVPSTTNGNG TIESYKEKSV GTSFLDFFRS YKLRPDNEFA  60
   61 EVHNSEDFLK PRHLQMIAIG SCIGTGLFVS TGKSLKNAGP GSLMINFIIL SAMILALILS 120
  121 LGEMCCFLPN QSSITMYTGR LLNNNIGFAQ SWLYFWIWLT VLPSEISAAC EVVDFWTTQH 180
  181 LNPAIWVTIF LAYVVLVNAF GARSYGECEF VSSFLKVVIV IIFFFVAIII NCGAAPKGGY 240
  241 IGAHYWHHPG SFRNGFKGFC SVFISSAYSL SGTENIGTAA GNTSNPQRAI PSAVKKVFYR 300
  301 MGFFYIITIF LITLVVPYDN PDLGNVSPFI IAIKNGGIHV LPHITNAVIL VSVLSVGNAA 360
  361 VFAASRNAMA LVKQGWAPRF LGRVDQKGRP VISYLCSLAM ACIAYVNAAP DGSVVFDWLM 420
  421 SVSGGGAFVI WGLSFIDHIR LRYAMKAQKI PDTVLPYKFP GSVYLSYYGV LINFLALCAL 480
  481 VYISIFPVTH EKPSAYGFFV SFLGPSVFIA YLLISPIFVK PTFQSLKDVD LTTGRYDLVN 540
  541 SQMYVAESST SELSEKDLTK PNLQSNDNKN SEDLESNTPP QKKSALQKVA DFLC