YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG15450-PA
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIQLVFLGI LLWASFFWLQ CRYLDVLELL FAWIGNQLAE TRRRRAREER CRLGKKWAVG  60
   61 NKGDGMEKLL SPPIKNRLNI RVEQCCDFIT AGLGLVLEDD VTQRFVAPPS PAGEWNLLTR 120
  121 NLRQRNRYLS WRLRTVWLLG WVVRYGLLLP FRTIGCWLCL FMISGVSMLL GHIPDWCFKK 180
  181 KLVELVLRQC FRITAACLPM IRRFHNTEYR PTKGICVCNH TSPLDVLVLM CDANYSLTGQ 240
  241 VHTGILGVLQ RALSRVSHHM WFDRKELADR EALGLVLRLH CSMKDRPPVL LFPEGTCINN 300
  301 TAVMQFKKGS FAVSDVVHPV AIRYDRRFGE AYWDSTRYSM LRYMLMVVSS WCICCDVWYM 360
  361 PALSRCNDES PVEFSNRVKA AIAAQANIDD LPWDGNLKRW SPVRDWQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.46
Transmembrane Helix	16	35	0.52
Cytoplasmic	36	129	0.77
Transmembrane Helix	130	148	0.74
Non-Cytoplasmic	149	153	0.72
Transmembrane Helix	154	173	0.87
Cytoplasmic	174	342	0.84
Transmembrane Helix	343	362	0.60
Non-Cytoplasmic	363	407	0.73