YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	out-PA, FBpp0310712
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.90
Transmembrane Helix	41	62	0.85
Non-Cytoplasmic	63	82	0.88
Transmembrane Helix	83	105	0.86
Cytoplasmic	106	112	0.85
Transmembrane Helix	113	135	0.87
Non-Cytoplasmic	136	142	0.57
Transmembrane Helix	143	164	0.90
Cytoplasmic	165	172	0.91
Transmembrane Helix	173	195	0.90
Non-Cytoplasmic	196	202	0.76
Transmembrane Helix	203	225	0.91
Cytoplasmic	226	462	0.99
Transmembrane Helix	463	482	0.87
Non-Cytoplasmic	483	497	0.75
Transmembrane Helix	498	518	0.91
Cytoplasmic	519	530	0.80
Transmembrane Helix	531	548	0.97
Non-Cytoplasmic	549	554	0.78
Transmembrane Helix	555	574	0.88
Cytoplasmic	575	591	0.72
Transmembrane Helix	592	612	0.90
Non-Cytoplasmic	613	618	0.75
Transmembrane Helix	619	638	0.92
Cytoplasmic	639	655	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKSSLTEKN HTQVYNDTTK PKKPKRRDKS DLGPDFVAPD GGWGWVVCLA AGLNNFFLFP  60
   61 ALQQYGLIYR VRMQSLGFDA KQTTTIVNVV MAISSLVGIV NGAMFRRFTF RQVALTGTSL 120
  121 AFLGVFLSAF CTTFWQYIIC LSAIFGIGLG LAMAATSLAV NTYFKLKRRR ATGFSWTITG 180
  181 LGPIFFPQVS TVLLGYYGAQ GTILIYAGIA MNAILCALTL QPVLWHVKKP EKPVHNTIEG 240
  241 IAETEKLQPE LLEANGNLLS PSNDPWKDYE CKYCQYQKRS KRGLFSSQYL FNVDDPERPG 300
  301 YEITEPGTPM LARANDGWFG SKLSLTSESA GGARSRTRQA LMRQVSSRSR ENLDRLEQNR 360
  361 HDQGPDTPSA AALYKPNYFN REREDLDRYA SKTSVYSRPG QDELLRCTCA EDKALLQKTA 420
  421 ESLQVNLFNN SADNTEAEEE AKRRMTFFQK VSKFFDLDLL RDFTFVNLAV GMSIMMFGEM 480
  481 NFSVLTPFIL NSFGYTDTQI SLVMSLLACM DISVRFLAPL ALEKVKLDNR VLFAFGILCI 540
  541 AVGRVVVAFT DSYEIMIGVF LLIGFGKAFR TIFSPLIIPS YVPLNRLPAA SGLQLIFNTI 600
  601 FSFAMGPILG ILTEAYGYAA TIHTINALTL LALLLWLAES VVRRILGIPS KGLGQ