YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gpi1-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIKIYLPVN YYYLNKSTNL YGQVQINEDN VVSYYVLEAS DLEFSDKAIN HEKGNLRFLG  60
   61 SILNEDFNAD QNQFLKFNMR LCFTYNSSQA NITLVYLGIT PEYLKHIKVI LYDKQMVRNL 120
  121 FVSGESENRR SLEYNDNDST DCDFLELSRL NQPTADNQNK ANNNANKSIQ YGLTLIADSP 180
  181 IKIFEYMAEN VFINSIMYVI DELYGLLKVL EGSPIGLKLN IHLNNFFLDC FKYHIELWST 240
  241 FLDFIEPLVR QVFLAIGMIG CLGFTFQIAL LVDLISVIGL HSHCFYIYTK VLYNVERRGL 300
  301 SVLWQVVRGN RYNILKGRTE SHNYMNRQLY LATIFFSAIL FLLPTTLVYY IVFAALKALT 360
  361 FATLSVFHFL RRKLMYLPIE VCIKRLLRGC HEIDCIQIKD VSHHERAFLM HKQQKINVTV 420
  421 YKITTL

Type	Start	End	Confidence
Non-Cytoplasmic	1	251	0.61
Transmembrane Helix	252	275	0.84
Cytoplasmic	276	325	0.69
Transmembrane Helix	326	347	0.78
Non-Cytoplasmic	348	348	0.48
Transmembrane Helix	349	370	0.76
Cytoplasmic	371	426	0.94