YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG33173-PA
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	178	0.85
Transmembrane Helix	179	203	0.86
Cytoplasmic	204	223	0.76
Transmembrane Helix	224	247	0.85
Non-Cytoplasmic	248	262	0.78
Transmembrane Helix	263	284	0.94
Cytoplasmic	285	292	0.72
Transmembrane Helix	293	311	0.93
Non-Cytoplasmic	312	321	0.72
Transmembrane Helix	322	341	0.72
Cytoplasmic	342	367	0.70
Transmembrane Helix	368	391	0.88
Non-Cytoplasmic	392	960	0.76
Transmembrane Helix	961	982	0.92
Cytoplasmic	983	996	0.69
Transmembrane Helix	997	1030	0.77
Non-Cytoplasmic	1031	1043	0.51
Transmembrane Helix	1044	1066	0.92
Cytoplasmic	1067	1073	0.56
Transmembrane Helix	1074	1093	0.94
Non-Cytoplasmic	1094	1103	0.54
Transmembrane Helix	1104	1123	0.50
Cytoplasmic	1124	1169	0.76
Transmembrane Helix	1170	1189	0.92
Non-Cytoplasmic	1190	1812	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKQRNFTT NVFIPDIRVA FAPNSNAALR RLMGDALGKL SMSEDKIVDF ENCNDMRIHA  60
   61 ASEHYLASVC FRNVDESLNG LPTVLNFAII MPSELRNYED TWIGDSWKET TTLMDRDVAE 120
  121 EDEFDEDGYT DYMGEGFVPL QYHISMQFLR ATASKVEKLP KVVMRRFNEN PNVLLSEGIG 180
  181 TSVVLLILLG FMFPVTILTT LIVEERELGQ RYMLKILNAS ATLQMAAWFF NVFTHFLITS 240
  241 LLITILLKIE WNGATAAVNK CPWPILLCFL ISYGCSVTSL IILMTSAMRR SRVAMVMAPI 300
  301 IWILLALPLL SKKELLSDGP DVFYGFATVL LCNVSFSRGL SKIFYIEDYT LGVTIGKYMF 360
  361 YRVSKSDFGI FVPIVCFYVQ TIFCTLLAMI FENNAYFWLA IRVKNLLKKY HATRSAVGRL 420
  421 KRQIPEVSFS KTSAEALIEF RGVWQKYSNS TYVVQDITLN VYAGEVVALL GHNASGKSTI 480
  481 IKMLYGRTRP KLGEIYLSGF NIVTQRKEAL KNSSISMSYK TLFTELVVLD HLVFLSRLRG 540
  541 LSKTEAKLEA KALLRYLKLE DWEKTLVNDL TIGQRRVLQF LCAFAGGNQI VILDKPFDGI 600
  601 DEQRTSLFYS LILDQKKNRS IFFTSNNQKV ASGIADRIFV LSKGKLQAFG TVKKLCRMLN 660
  661 ESYRLIIFGN EKCSFKDVYA FMATFIPEIE MDSILADCAS FLVKHKYHTE LINLIENLAR 720
  721 LKNDLNVYSF EIHECSIDDI LASLYTRDKS TLEFGQPGLQ TLLASRQQSA KRRFIIPTMY 780
  781 LLEELRQLLI ADTRNWFLPI LKLTLPSLVV VWTLSMPYFW HNCRQPGHIT FPMSDHGDGI 840
  841 ILMQKDTLDS ELLVASEMYA KVGVTEVDKT VDITTFIYNY EYKNSLLSDA DIMEAVIFSN 900
  901 VQIEVLFNTK WPHTAPDSLA QALNSLAVAF IDGDAGIKVE LEVLPFSTIH TLQLHLNIDG 960
  961 YDLIFASCLS FCFCFIWSIP LLHMTLSRDG RYNYVELIAG MPTIVLIVAF LIYELLVVLL1020
 1021 ALFPINIAVI FFHWDLLMDS NIHIYSVYVM FIIAACVFSL NILITIMPIS DMPFVYLKVL1080
 1081 LAYSLGILVY IAVKELRPFT NPNTAHFLLL DFHPFYALLH NLMRIASISE KIWLCSDRQI1140
 1141 YETSVYADQC NTIPNCCDDD AQEFYHLRYL CCVYLLLVVV WISIFIFLKS HMVKRRPRQP1200
 1201 KYFWDSDPDS KYDQNILHIM EPSELENTWI HEKSRVSTLE RNHIESKALH VEHLSVFFGL1260
 1261 KAAIKHIDFM VNRYQVMSVF GANGTGKSVL LKTILGIYTP SSGRIISSKT VPFKSKDLDS1320
 1321 CHMVGYSAQE FQTMQLMTIL ETWDLILRIR RSKQISFRAE ATKLCKIFGL YKYRFNSLSI1380
 1381 CSQGVLKRLS LGIALMSDAE LILLDDPFTH LDIVSQRSML HIIHDLRRRG HSIIYTCSDT1440
 1441 AYSTPALRMA TLSYPGIAVI GEREEMQQNY YSSYYMVETR IHLAELGSPI DFDSQSTEAK1500
 1501 EDRAGTTGTL LRHKHQEFSA AFTDSADRWK YLKLCGVIEN VFPHAIIKNV SFPRVCFWLS1560
 1561 SHMYPMSRIV DTLHRNKQDF YSFSVSQPSH LFVVILVSSA VPLTEALGST VCADRFNGLS1620
 1621 FADPASCSSF FVCQRGNAVR RECSNGLYYD PKIQTCNLPG LVKCFNGDRG GSVLGDVKAN1680
 1681 VTLVPNGKAN GEVTTTPPQT TTCPPTTTVT PAVTTKKSKL ILDTEDADDA HSIFQVTPHP1740
 1741 LTNRIDVLRS QRDCRGINDG EYLTDPKHCR RFYMCHKNRV KRHNCPRNQW FDRETKSCQD1800
 1801 RELVLNCPVN RN