YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	shtd-PB
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGAAFCIGL KYAGTENLVA FATLRSVIKD FLRFPSRPMG ECAGRTTVES CLMVLLISIS  60
   61 LVFAGSGNCE ILRIIRFLRS RVGPQYPHIT YGSHMAIHMS LGLLFLGAGR FTISQTPESI 120
  121 AALVCAFFPK FPIHSNDNRY HLQALRHLYV LAVEPRLFLP RDIDTNKLCL ANISVLEVGA 180
  181 TELRRLPIAP CILPVLSTLQ QVVVDDENYW PVCFERSRNW DQLEKALEMS APIDIKKRTG 240
  241 CLSHLEDPDR LKSMLAQTLT MEQSICWQID MNDLQQFASE RMVKQFLSRC LDTKGTDLSP 300
  301 PELMKRHQVM LLFYNAVVKD RMHFLPVYLT LYDHVTKSMP NNIDVWQMKL IDAYLSRSQE 360
  361 SEHPLISVEL IQMMQELFKQ EMEDSTRELC LPLREFLSRR RLDPSYVTTV SGPDLQRAFC 420
  421 VINYYNLLPN MLNGVDLSTG TVNYMRLLYE FRRLNLGAHT IFGLMKILQS LATEVVTLDE 480
  481 AALLAYTMGD Q

Type	Start	End	Confidence
Non-Cytoplasmic	1	49	0.53
Transmembrane Helix	50	72	0.74
Cytoplasmic	73	88	0.60
Transmembrane Helix	89	109	0.80
Non-Cytoplasmic	110	491	0.80