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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: shtd-PA
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAVAEPPLE FVPRGRQTSA EHPGPHDQPM ARHQLPTTEH LLLQRLQNVN ISSAGEDCPS  60
   61 GGQESWTVRE LYDDYEASEE RAALRRKLTE RTKRCGLQAT SLPNRLLNPP LVRRVEPMCD 120
  121 YMVNNEEELY VNRNTVVWTQ GVNDDDDTDN GVYRRMCFTT DTPVRFACFL NRSFVRGRLA 180
  181 QLKAAVHPDD DHLTAICVMD QDALRVYCSN GEDFLANLDF PVSQLWQTKY GLLLEKDSSN 240
  241 ALISHMSIPM PRLFSMSHPL HEACPVVLKT ATGSTGYMTE PEYTVVFTTE ESDLVMLYDA 300
  301 KFFKHFVARL RKVTPEEINY VSQQMELGQT LMGPRSMAGN SFSSTKQTGA TPKATNLSFA 360
  361 ARNINTTTTG MGNQFGLSQS QSFSGVLGQS NRASLGTPLS QLQSSISQQS MSVKDMRKLT 420
  421 HVKPAKPIEP ELCMEHIWTE NIYGTQREFC EMATRAFIHT DLVGQTFLCY LLARSCRLQL 480
  481 VRLTGYGRGE VQLSTHASTL AAKDAVGLKR MHMIAVLDPS GSLLLYTGTV LISKVHITPF 540
  541 LAPTSIPTPL VTPMTAAPSP SASPAPSHVK TPMAAAGPAS GIPSGSSSFV EVRRSSLLPT 600
  601 KAPGDVAAFE EELHMLSPIQ PQPVSYTQRQ AHNVCKSLRD PAGNRLTLVY ATGRMLRIAL 660
  661 PFLNDTRLLT RCVATLRQVL SPTQFLDFVI RWYSDRNPPG SRNYSIEQEW LLFRSTLLAL 720
  721 MGLTAAPDVD AGENYARCAT PPLHTQFGGG ATATESSDGS SCSSNSTLGG QDEPKKRRIY 780
  781 NDCDDFTDDD WEFLLLQTTL APCGADGHSY SVNIGALLFR MIPAIFFSLH LLYEDLKLDA 840
  841 DFYGALPYLA TFLHQLAIDM QLESYVLHYI LDFPELSNRT GKLSLLGAEH GAMMLHQELL 900
  901 RVPAPSVFAQ LEHIIVGEEE VMPYTFLECV NERSRILLQL VSLVTHGHER LNYWWQLLEI 960
  961 PGAVQANFTR RSKRNITADA PRSHQMLQLL LAMRLTRRDI ERFPAAVHLI VAEALEEARL1020
 1021 SPPMGCSMAT YELILRPELA AHAQLPFLET STGQPHCGRV YKEDSLSARC PPTGGSETDS1080
 1081 PAQLRRDDMD NMDTKLLRLR FPDDMRVDEV RRLLNSSEPV VIEVQQAPGT SDHEFIEEQE1140
 1141 KQLFALCSRT MTLPVGRGMF TLRTMLPRPS ESLTMPKLCL LGKEPLKGTT IEMQQIEFPA1200
 1201 NMQMWPSFHN GVATGLKISP QAQDIDSNWI VYNKPKTHSH NALEHAGFLM ALGLNGHLKT1260
 1261 LSFMSVYKYL VKCDEMTNVG LLLGISAAHR GTMDTKTTKL LSVHLEALLP ATAMELDIPQ1320
 1321 STQVAAIMGV GLLYQGSAKR HIAEVLLQEI GRPPGPEMEN SIERESYAMT AGLSLGLVTL1380
 1381 GQGESPAGLR DLQLPDTLHY YMVGGVKRPI GGSQKEKYRL ASFQVREGDT VNIDVTAPGA1440
 1441 TLALGLMFFN SGNAAIAEWM QPPDSRYLLD MVRPDFLLLR TISRGLILWQ DVRPDNAWFQ1500
 1501 AQFPRALRAH LKLPFYENEY APEDYDVDYE AISQAYCNIM AGAAFCIGLK YAGTENLVAF1560
 1561 ATLRSVIKDF LRFPSRPMGE CAGRTTVESC LMVLLISISL VFAGSGNCEI LRIIRFLRSR1620
 1621 VGPQYPHITY GSHMAIHMSL GLLFLGAGRF TISQTPESIA ALVCAFFPKF PIHSNDNRYH1680
 1681 LQALRHLYVL AVEPRLFLPR DIDTNKLCLA NISVLEVGAT ELRRLPIAPC ILPVLSTLQQ1740
 1741 VVVDDENYWP VCFERSRNWD QLEKALEMSA PIDIKKRTGC LSHLEDPDRL KSMLAQTLTM1800
 1801 EQSICWQIDM NDLQQFASER MVKQFLSRCL DTKGTDLSPP ELMKRHQVML LFYNAVVKDR1860
 1861 MHFLPVYLTL YDHVTKSMPN NIDVWQMKLI DAYLSRSQES EHPLISVELI QMMQELFKQE1920
 1921 MEDSTRELCL PLREFLSRRR LDPSYVTTVS GPDLQRAFCV INYYNLLPNM LNGVDLSTGT1980
 1981 VNYMRLLYEF RRLNLGAHTI FGLMKILQSL ATEVVTLDEA ALLAYTMGDQ 

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