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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: HDAC6-PA
Protein type: Globular with Signal Peptide
Type Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPPIVTRRS AQQAKIQTRA MASKSKTGTT GAATAAGGTG SSSGSISGGF NAADPRKSNK  60
   61 PNAALLEAKR RARNNMLKNQ GCGSQESVTD IFQNAVNSKS LVRKPTALIY DESMSQHCCL 120
  121 WDKEHYECPE RFTRVLERCR ELNLTERCLE LPSRSATKDE ILRLHTEEHF ERLKETSGIR 180
  181 DDERMEELSS RYDSIYIHPS TFELSLLASG STIELVDHLV AGKAQNGMAI IRPPGHHAMK 240
  241 AEYNGYCFFN NVALATQHAL DVHKLQRILI IDYDVHHGQG TQRFFYNDPR VVYFSIHRFE 300
  301 HGSFWPHLHE SDYHAIGSGA GTGYNFNVPL NATGMTNGDY LAIFQQLLLP VALEFQPELI 360
  361 IVSAGYDAAL GCPEGEMEVT PACYPHLLNP LLRLADARVA VVLEGGYCLD SLAEGAALTL 420
  421 RSLLGDPCPP LVETVPLPRA ELAQALLSCI AVHRPHWRCL QLQQTYDCVE LQDRDKEEDL 480
  481 HTVLRHWIGG PPPMDRYPTR DTAIPLPPEK LTSNAARLQV LRAETKLSVP SFKVCYAYDA 540
  541 QMLLHCNLND TGHPEQPSRI QHIHKMHDDY GLLKQMKQLS PRAATTDEVC LAHTRAHVNT 600
  601 VRRLLGREPK ELHDAAGIYN SVYLHPRTFD CATLAAGLVL QAVDSVLRGE SRSGICNVRP 660
  661 PGHHAEQDHP HGFCIFNNVA IAAQYAIRDF GLERVLIVDW DVHHGNGTQH IFESNPKVLY 720
  721 ISLHRYEHGS FFPKGPDGNF DVVGKGAGRG FNVNIPWNKK GMGDLEYALA FQQLIMPIAY 780
  781 EFNPQLVLVS AGFDAAIGDP LGGCKVTAEG YGMLTHWLSA LASGRIIVCL EGGYNVNSIS 840
  841 YAMTMCTKTL LGDPVPTPQL GATALQKPPT VAFQSCVESL QQCLQVQRNH WRSLEFVGRR 900
  901 LPRDPVVGEN NNEDFLTASL RHLNISNDDA TAAAGGLAGD RPDCGDERPS GSKPKVKVKT 960
  961 LSDYLAENKE ALEQSEMFAV YPLKTCPHLR LLRPEEAPRS LDSGAECSVC GSTGENWVCL1020
 1021 SCRHVACGRY VNAHMEQHSV EEQHPLAMST ADLSVWCYAC SAYVDHPRLY AYLNPLHEDK1080
 1081 FQEPMAWTHG CAWREDGCYA TGPDGRDEDD DDDNGAGSSI CLRLERNN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle