YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG1998-PA, FBpp0...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPVHGKPP NSMGLSSGSL SASSPISVSQ QAGSSGNSSS SSSSSSSYSL GGGIVKDKAG  60
   61 LPPVYLNLND NAKEQTPLPG SPLQNWDDAR TADVWLSSLH SVIFIITCAL AAFILFRNVL 120
  121 TWHLQSFWGA SGDFWQSQWD KFIDSFGDEP MVLWVFGTTI FTMLVYWTVG TLYTFMDLTN 180
  181 RPACLRKYKI QPGTNEPVEV RRLLKVIWCV VCNQIFVGIP LAYASYRLME IRGLSDIRDL 240
  241 PTFHWVCFEL TVCILMEELG FYYSHRLLHH KHIYKYIHKQ HHEWTAPISV TAIYCHPIEH 300
  301 IFSNLLPPFL GVFLMGSHVA TAWLWFALAI LSTLNAHSGY HLPFFPSPEA HDFHHLKFNN 360
  361 CFGVLGVLDR LHGTDSLFRA TKSYARHIMM LSFKPPRDAF PDPTMK

Type	Start	End	Confidence
Cytoplasmic	1	98	0.96
Transmembrane Helix	99	120	0.89
Non-Cytoplasmic	121	151	0.93
Transmembrane Helix	152	176	0.86
Cytoplasmic	177	205	0.91
Transmembrane Helix	206	224	0.90
Non-Cytoplasmic	225	241	0.82
Transmembrane Helix	242	263	0.79
Cytoplasmic	264	283	0.79
Transmembrane Helix	284	302	0.56
Non-Cytoplasmic	303	308	0.58
Transmembrane Helix	309	334	0.74
Cytoplasmic	335	406	0.73