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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: tomosyn-PD, tomo...
Protein type: Transmembrane
Type Confidence: 0.91
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKFTFKGVL DGFRQSVQPQ ATRQEQEIQE QLKADHFTLK KTFRHGFPYS PTSFAFDPVQ  60
   61 KLLAIGDKSG YIRILGRPGV DAHAKHEGES ECAVLFAQFL VNEGALVTVT ADDTIHLWSI 120
  121 RQKTPRIVQS LKFQRERVTC IHLPVGSKWL YVGTEKGNIH VVHIDTFALS GYIINWNKAI 180
  181 EVVRTSHPGA VIALCDNPLD ANKLLIAFEC GLLVLWDLKA KCAELRWQAA EAVKSLAWHY 240
  241 EGKYFVSSHT DGSICSWPTK PQAKPQSQVC PHAKINKDGN AEKCKPIYKV DLKSSATGET 300
  301 FTIFSGGMPS EKGSKSNCIT VMVGKATTVL EMEHAVCDFI TLCENPWPCE TQEPYAIAVL 360
  361 LQYDLVLIDL LTPGFPCFES PYPMDLHESP VTCCTYLTDC PSDLVPAFYS VGRTTTSKKS 420
  421 CFSEREWPIS GGEWSPASCS YSEIVITGHQ DGSLKFWDSG AGTLQILYKL KTAKMFEKPR 480
  481 SHVAHSHPES DNPLAVHLIF LCSESRRLCV AGAMGQVMLF KFRKVESTSE VLVLEIPILY 540
  541 ENFDDIYGTS PECDFLTGHQ VQKAESSDSD KTAECSLKVR NGAQRKPPGF QSQLVCLTTG 600
  601 PNRRNVQVTS LCISSSYGLM AYGTEYGLVI IDIIQKICLL SVACPDLYGA HDPYSRTPKS 660
  661 PKRIENKEEQ SRSPSSDQIN GSGVATAAPQ QQQQQQQQLQ QSQQQQQQQL QQQQQQQQQQ 720
  721 QQQQQQQQQS LGGDPGDHAT STSAGAATLA GSSIYGADDA GAGVASGGVG VGGISSAISG 780
  781 GFGGAAEPQQ QQQVSQQLHQ LQQLQQQSQQ QQQSFEASCD PWGGECGGGG AGGSGGGGGA 840
  841 SGGGGASGAG AQQHQYQHPH PYPHPHPYPH QTSVIQQQQS VTSYESLKKS KSQGGSTTEH 900
  901 YSKQQLTATT TTTTTTTIAT KYNSKQYKQQ QQQNNNLNSN QPNNQIAPLV MKKKNNSHIF 960
  961 FYQYTTHTHT NTHFKCNKLD GTFSRSRSSS MSSIDMSSSE SVTCLAFIES YAKRNDILTL1020
 1021 VPTLWIGTSF GSILTLFITM PERDVRKSQP VLITINGGPV VRLKGSITSM SFLDSYGSII1080
 1081 PYTFETWRDE KRDNKDRTPT KSSSRTSPTF TPTTANTLSN TSVAGGASAG GGAGGGGGAG1140
 1141 GGAASGGAAA GGPAGGGAGA GSAAGAAGGV GSGVTSGGGM SSSSASSSGI SGSVSTGLET1200
 1201 LTDRQYIVIA SEKQTKVFDV ANQCCINRIQ LSEMDFAVKA ETITMKDGSC LATYLSNGHL1260
 1261 MVHSLPSLKL LLDTDFLPLM ELSFQTKCKQ GIVDPMLSIW GQQIIVHEDT TQISKIFCFS1320
 1321 HKGHGLYMAS PTEIQKFTIS SEFCQFILEM MGELYTVHEM PEQPKEGFFK GLFGGGAKLL1380
 1381 DREELFGEQS GKPNRSVARH IPGPNLEQLG QRASTAASEI SRAHQLAMER GEKLNLLEER1440
 1441 AERMANTAQD FSGTAHQLML KYKDKKWYQL 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle