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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: pot-PA, pot-PB, ...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.97
Topology Confidence: 0.26
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDQGPLLA KRGRHGLLAA LLLICLAGQT AAQSNYVQHG DSGNYTTNGL PEEATLDGKV  60
   61 TKLDDISPLI FLNRTKAALN CAAGSMQVDL KFNDPFHGII QADYDRSSAC RVSGKGALSY 120
  121 RLELPLKGCG TIQNPTRVFT NNIIVRFHAN LEMDGDEIIT IVCRYPPPVP SLPPALPAPI 180
  181 LNPIATSSVL QPPLKSIQIL MIICAIMFLT LLLLGLAVSY YCLRSRSIPV VRRLPMSMGS 240
  241 GSEITKLSGS SVGNISAFEG VKIPRAHAAL QAVYSSSGSE GALIPSDYPS ESHSEIEEID 300
  301 TRSLPFSSAG SFENRAFVHE TSSIYSDHYA PAQEMPSANA VMTTTSVTRH SIPIQEAVAA 360
  361 VDSPKFDVQV RVKKSPPPPP SPVTSDTESV ATLRPDRNNL STIMEAYEDR ESVLTMDSLP 420
  421 PQVETMHSQF TYVPELHPAP QVPQSIPLPP PAVVEPKFSV YTRTHHEVVD GRPETWSDYT 480
  481 DGPAPSEITD LSSEAPDMTV ETMHYYEDEF MPAVEPPVTS HTVDDVYLRT VTEKKTIEDI 540
  541 ESHKRRVTEY KSKPRAPLPP PPPPPQVDPK FDVRVRNYPG DREQQLWENF SDISSASGLT 600
  601 LTPKMERSEL SLPPAELPAQ IHDNKLKLTS PELVGNMKPI EVPPQDKDVP NWDVLIRILE 660
  661 EPEMSEVGQD DVSSVHNLTY DDRAKWKEII TTQSSLRTML TEAVVREDFE RIRQDTRYER 720
  721 MFEPQTWDVI IRILAPPGDD DPDVEMRTPR RGKKASPQPW DTRSRRSSLP TLYEYDSDGG 780
  781 SSVRTIRNDP GMSGVLMTGA GPGGAPGGPF NLQRSRRSSR TSYQTDHNDF RSMSEVTVDF 840
  841 GRPHQVDHPD NVSDASSYYR MQYYDDDDRR SFHRSLSHPS LARSASEFTE HWTAPDEMEV 900
  901 SSPEGTPHTR RARQPLSSQQ VALATGRSGE RVLSQTQTQS EYVETHRRVY HAEKEMPLPP 960
  961 RKW

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle