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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: lz-PA
Protein type: Transmembrane
Type Confidence: 0.91
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLHLLAAEK TPPSPSPNPT PTPSASPSGH TGAAGESQLD LASQTESQLQ LGLPLASGYG  60
   61 LGLGLGLGLG LGLGQELVAD HSTTVAPVSV AGPGRLGRSI NGSGGSHHHH HLHHHYSPYH 120
  121 HAHPYHPPHP HAPHHHHHHH PPYPYPPAGP HPPAMVTSSS TSPTGNGWSS STGDFKGITA 180
  181 VATATGGGVG GATQGATAST GATAAEVLAV SSSASVGSSS PTGGASNGTA HSGHSGHTGG 240
  241 HSSSTASNNN NNGASNSNSN NNNAVHQDLL WMERLVQKRQ QEHPGELVRT SNPYFLCSAL 300
  301 PAHWRSNKTL PMAFKVVALA EVGDGTYVTI RAGNDENCCA ELRNFTTQMK NDVAKFNDLR 360
  361 FVGRSGRGKS FTLTITVATS PPQVATYAKA IKVTVDGPRE PRSKTSPTGG PHYRALGLGQ 420
  421 RPYIDGFPST KALHELESLR RSAKVAAVTT AAAAAATAAS AANAVAAAAA AVAVTPTGGG 480
  481 GGVAAGGVAG GAGAGLVQQL SSNYSSPNST INSDCQVYKP NAPHIQAAEM MGAGEWTNGS 540
  541 SSSAAAYYHS HAHHPHAHHA HAHLQHQMAL PPPPPPPAAA PVSVGVGGNG ATMGMGMGVG 600
  601 VGMGMNHYGG GYDSANSLEA GQYAAHLPAV LPEMHGHGFA TDPYQTAGYG GGNTGGGSAS 660
  661 KSELDYGGSY NQAWSNGYQN YQYGSCLATA QYGPQAAPPP QPPPPPPVVL CPQLYSTVNQ 720
  721 NQIHLHLHSS EKLEQYLGTA TSADHLTIGS LTGSSRSSIE IGQDQYHQQV HHAQQQQQQQ 780
  781 QQQQQVHHPQ QQQVESAGEV GGSGAGGVES AREEDVGDLS QVWRPY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle