YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG3842-PA, CG384...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEAATPPGS VPGTVFPPGF DPTAESVEKT LCFRGFWAWA VLIFLIVLGI LLFMWLLRKC  60
   61 IQGPAYRKAN RIDGKVVIVT GCNTGIGKET VLELAKRGAR VYMACRDPGR CEAARLDIMD 120
  121 RSRNQQLFNR TLDLGSLQSV RNFVERFKAE ESRLDILINN AGVMACPRTL TADGFEQQFG 180
  181 VNHLGHFLLT NLLLDRLKHS SPSRIVVVSS AAHLFGRINR EDLMSEKNYS KFFGAYSQSK 240
  241 LANILFTLKL STILKDTGVT VNCCHPGVVR TEINRHFSGP GWMKTALQKG SLYFFKTPKA 300
  301 GAQTQLRLAL DPQLEGSTGG YYSDCMRWPL FPWVRNMQTA DWLWRESEKL LGLPPLEPPP 360
  361 PVQSPTQNGN GTQNGNGSSS ASASASSNNP ASREMQSVET VVVNRS

Type	Start	End	Confidence
Cytoplasmic	1	34	0.78
Transmembrane Helix	35	57	0.92
Non-Cytoplasmic	58	406	0.80