YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: vanin-like-PA
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.83
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNTWWWLSV VLLILGLMPG MSQQAALAES DYYTAGVVEF KQSILSLSAW SDSLAGYVEI  60
   61 INSENASATD IIVFPESTLN SAGSTTFVPN PEDQINPCLS DPNATYYEEF LVTLSCAARN 120
  121 ASKYIVINLT EKQKCEDIPE DTRPCASNGL NVFNTNVVFD RQGVVVSRYR KVHLYGEAKN 180
  181 STFLPELITF ETDFGVTFGH FICFDILFYT PAHQLIVEQG ITDFVYPAMW FSQLPFLTAV 240
  241 QTQQGWAYAN DVNLLASGAS RPSIGNSGSG IYHGRSGTLT SVMRQDSGER AIYVAQVPKY 300
  301 TRSRSLKKRA KRSLQEIQTR QVASSSSFYM KRDYVENYES ELLKLDEGTS GAINRTICQG 360
  361 SFCCNFDIAW RSLGTATENG SYYSYRLGTY DGWRNENNVD ANYIRNCALF TCSGDSIDDC 420
  421 GKLLPTEGEL QQSRVTFTRL AIGVTYPESR EFLLFPDTLQ DSLLPLEPSQ FEWSQRKPTE 480
  481 DSYVQEVRFA LKETQELSNL LTFGIYGNYY DNECTFGVGT EEEQLACGYR SGSPGLRILG 540
  541 GWLAMPLIIL AIARTMSS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle